RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 CACNG5Q9UF02 275 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 LOC102723971A0A1B0GUV8 181 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 CDK2AP2O75956 126 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 ATP6V1G2O95670 118 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 SLC25A4P12235 298 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 ZNF79Q15937 498 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 OR52E5Q8NH55 327 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 MARCH1Q8TCQ1 289 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 RNASEH2CQ8TDP1 164 aaKnown RBP13.51□□□□□ -0.25
NUP88-203ENST00000572019 COPZ2Q9P299 210 aa13.51□□□□□ -0.25
NUP88-203ENST00000572019 SMIM31A0A1B0GVY4 71 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 CDS2O95674 445 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 OXA1LQ15070 435 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 FOXI2Q6ZQN5 318 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 SELENOHQ8IZQ5 122 aaKnown RBP13.5□□□□□ -0.25
NUP88-203ENST00000572019 GLYATL2Q8WU03 294 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 RNF125Q96EQ8 232 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 C20orf173Q96LM9 149 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 Q9H521 79 aa13.5□□□□□ -0.25
NUP88-203ENST00000572019 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.5□□□□□ -0.25
NUP88-203ENST00000572019 ATG12O94817 140 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 RORCP51449 518 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 FAAP20Q6NZ36 180 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 ARRDC1Q8N5I2 433 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 PBDC1Q9BVG4 233 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 TMEM222Q9H0R3 208 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 PRR13Q9NZ81 148 aa13.49□□□□□ -0.25
NUP88-203ENST00000572019 IGKV1D-37A0A075B6S9 117 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 CEBPZOSA8MTT3 80 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 ZNF90Q03938 601 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 FAM78BQ5VT40 261 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 ZNRF2Q8NHG8 242 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 TERB2Q8NHR7 220 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 CLUHP3Q96NS8 147 aa13.48□□□□□ -0.25
NUP88-203ENST00000572019 RTBDNQ9BSG5 229 aaPredicted RBP13.48□□□□□ -0.25
NUP88-203ENST00000572019 GSTZ1O43708 216 aaPredicted RBP13.47□□□□□ -0.25
NUP88-203ENST00000572019 HBE1P02100 147 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 VBP1P61758 197 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 DAD1P61803 113 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 PSG9Q00887 426 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 SCGB2B2Q4G0G5 96 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 NMSQ5H8A3 153 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 CCDC71LQ8N9Z2 235 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 C17orf77Q96MU5 243 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 ABHD1Q96SE0 405 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 MTFP1Q9UDX5 166 aa13.47□□□□□ -0.25
NUP88-203ENST00000572019 DNAH5Q8TE73 4624 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 NBDYA0A0U1RRE5 68 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 TEX48A0A1B0GUV7 120 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 PSMB3P49720 205 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 AMTNQ6UX39 209 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 FAM219AQ8IW50 185 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 COQ8AQ8NI60 647 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 ZFAND1Q8TCF1 268 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 RBPMSQ93062 196 aaKnown RBP13.46□□□□□ -0.25
NUP88-203ENST00000572019 C7orf50Q9BRJ6 194 aaKnown RBP13.46□□□□□ -0.25
NUP88-203ENST00000572019 GOLT1BQ9Y3E0 138 aa13.46□□□□□ -0.25
NUP88-203ENST00000572019 A0A0J9YX75 114 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 TEX13DA0A0J9YY54 714 aaPredicted RBP13.45□□□□□ -0.26
NUP88-203ENST00000572019 ZNF705GA8MUZ8 300 aaPredicted RBP13.45□□□□□ -0.26
NUP88-203ENST00000572019 PAX9P55771 341 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 RRN3P1Q2M238 152 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 TMEM268Q5VZI3 342 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 Q8N1X5 172 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 C6orf223Q8N319 242 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 NAA60Q9H7X0 242 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 TMED3Q9Y3Q3 217 aa13.45□□□□□ -0.26
NUP88-203ENST00000572019 FAM25AB3EWG3 89 aa13.44□□□□□ -0.26
NUP88-203ENST00000572019 FAM25CB3EWG5 89 aa13.44□□□□□ -0.26
NUP88-203ENST00000572019 FAM25GB3EWG6 89 aa13.44□□□□□ -0.26
NUP88-203ENST00000572019 FCN2Q15485 313 aa13.44□□□□□ -0.26
NUP88-203ENST00000572019 ETFRF1Q6IPR1 90 aa13.44□□□□□ -0.26
NUP88-203ENST00000572019 RAB3DO95716 219 aa13.43□□□□□ -0.26
NUP88-203ENST00000572019 LYZP61626 148 aa13.43□□□□□ -0.26
NUP88-203ENST00000572019 OR2F1Q13607 317 aa13.43□□□□□ -0.26
NUP88-203ENST00000572019 FUNDC2Q9BWH2 189 aa13.43□□□□□ -0.26
NUP88-203ENST00000572019 HERC1Q15751 4861 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 PLAC8L1A1L4L8 177 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 A8MTW9 85 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 CRXO43186 299 aaPredicted RBP13.42□□□□□ -0.26
NUP88-203ENST00000572019 TBPP20226 339 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 ID1P41134 155 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 SUPT4H1P63272 117 aaKnown RBP13.42□□□□□ -0.26
NUP88-203ENST00000572019 KLF9Q13886 244 aaPredicted RBP13.42□□□□□ -0.26
NUP88-203ENST00000572019 GAMTQ14353 236 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 OR8G2PQ6IF36 304 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 C15orf53Q8NAA6 179 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 TMEM229BQ8NBD8 167 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 ATG101Q9BSB4 218 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 KRTAP1-5Q9BYS1 174 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 MAGT1Q9H0U3 335 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 SCRT2Q9NQ03 307 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 EXTL2Q9UBQ6 330 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 LINC00588Q9Y4M8 146 aa13.42□□□□□ -0.26
NUP88-203ENST00000572019 ZFP92A6NM28 416 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 AZU1P20160 251 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 FAM3BP58499 235 aaPredicted RBP13.41□□□□□ -0.26
NUP88-203ENST00000572019 IGFL4Q6B9Z1 124 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 STEAP1BQ6NZ63 245 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 EBLN2Q6P2I7 272 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms