RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 S100A7P31151 101 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 NUP62P37198 522 aaPredicted RBP15.62■□□□□ 0.09
VPS53-210ENST00000571456 SELENOTP62341 195 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 SLC38A11Q08AI6 406 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 TEPPQ6URK8 271 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 OR51G1Q8NGK1 321 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 DYNLRB2Q8TF09 96 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 NARS2Q96I59 477 aaKnown RBP15.62■□□□□ 0.09
VPS53-210ENST00000571456 B9D2Q9BPU9 175 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 OR5AC2Q9NZP5 309 aa15.62■□□□□ 0.09
VPS53-210ENST00000571456 A0A1W2PS18 150 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 H0YIZ8 118 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 C3orf84H3BNL1 204 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 LILRB2Q8N423 598 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 METTL26Q96S19 204 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 RNF126Q9BV68 326 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 TMEM231Q9H6L2 316 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 ZFAND3Q9H8U3 227 aa15.61■□□□□ 0.09
VPS53-210ENST00000571456 IGSF23A1L1A6 192 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 SMCO3A2RU48 225 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 CST7O76096 145 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 RAB31Q13636 194 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 VWC2Q2TAL6 325 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 TM4SF20Q53R12 229 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 LCN12Q6JVE5 192 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 Q6ZNX1 250 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 TMEM147Q9BVK8 224 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 UQCC1Q9NVA1 299 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 MBD2Q9UBB5 411 aa15.6■□□□□ 0.09
VPS53-210ENST00000571456 IGKV1D-37A0A075B6S9 117 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 TRAV25A0A0B4J276 109 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 WI2-2373I1.2A0A1W2PRP0 233 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 MPDU1O75352 247 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 CCNKO75909 580 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 PSG1P11464 419 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 NPPCP23582 126 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 EWSR1Q01844 656 aaKnown RBP eCLIP15.59■□□□□ 0.09
VPS53-210ENST00000571456 S100A7AQ86SG5 101 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 HAPLN4Q86UW8 402 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 TMEM217Q8N7C4 229 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 BPIFCQ8NFQ6 507 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 ZNF414Q96IQ9 312 aa15.59■□□□□ 0.09
VPS53-210ENST00000571456 IGKV1OR2-108A0A075B7D4 117 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 IGHV7-4-1A0A0J9YVY3 117 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 ARL16Q0P5N6 197 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 LAMTOR1Q6IAA8 161 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 SMPXQ9UHP9 88 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 SLC45A2Q9UMX9 530 aa15.58■□□□□ 0.08
VPS53-210ENST00000571456 LSM4Q9Y4Z0 139 aaKnown RBP15.58■□□□□ 0.08
VPS53-210ENST00000571456 IL4P05112 153 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 CRYBB3P26998 211 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 RPL12P30050 165 aaKnown RBP15.57■□□□□ 0.08
VPS53-210ENST00000571456 DEFB114Q30KQ6 69 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 PXDC1Q5TGL8 231 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 ZNF546Q86UE3 836 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 OR2T35Q8NGX2 323 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 RNF125Q96EQ8 232 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 WDR89Q96FK6 387 aaPredicted RBP15.57■□□□□ 0.08
VPS53-210ENST00000571456 GRAMD2BQ96HH9 432 aa15.57■□□□□ 0.08
VPS53-210ENST00000571456 DFFBO76075 338 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 HNRNPCP07910 306 aaKnown RBP eCLIP15.56■□□□□ 0.08
VPS53-210ENST00000571456 ADAMTSL5Q6ZMM2 481 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 OR5C1Q8NGR4 320 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 CHAC2Q8WUX2 184 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 VSIRQ9H7M9 311 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 RABAC1Q9UI14 185 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 RNF24Q9Y225 148 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 WDR83OSQ9Y284 106 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 ZNF256Q9Y2P7 627 aaPredicted RBP15.56■□□□□ 0.08
VPS53-210ENST00000571456 HSPB11Q9Y547 144 aa15.56■□□□□ 0.08
VPS53-210ENST00000571456 NHLH2Q02577 135 aa15.55■□□□□ 0.08
VPS53-210ENST00000571456 ZNF90Q03938 601 aa15.55■□□□□ 0.08
VPS53-210ENST00000571456 CYP2G1PQ6ZSU1 146 aa15.55■□□□□ 0.08
VPS53-210ENST00000571456 RHPN1-AS1Q9BWJ2 59 aa15.55■□□□□ 0.08
VPS53-210ENST00000571456 CHEK1O14757 476 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 EIF2B2P49770 351 aaKnown RBP15.54■□□□□ 0.08
VPS53-210ENST00000571456 PLP1P60201 277 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 KRTAP10-11P60412 298 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 RBPMS2Q6ZRY4 209 aaKnown RBP15.54■□□□□ 0.08
VPS53-210ENST00000571456 INO80EQ8NBZ0 244 aaPredicted RBP15.54■□□□□ 0.08
VPS53-210ENST00000571456 AQP10Q96PS8 301 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 KCNIP2Q9NS61 270 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 U3KQK5 164 aa15.54■□□□□ 0.08
VPS53-210ENST00000571456 CD300EQ496F6 205 aaPredicted RBP15.53■□□□□ 0.08
VPS53-210ENST00000571456 BTNL8Q6UX41 500 aa15.53■□□□□ 0.08
VPS53-210ENST00000571456 MLXQ9UH92 298 aa15.53■□□□□ 0.08
VPS53-210ENST00000571456 U3KQE9 123 aa15.53■□□□□ 0.08
VPS53-210ENST00000571456 IGHV3OR16-8A0A075B7F1 116 aa15.52■□□□□ 0.08
VPS53-210ENST00000571456 AGPAT2O15120 278 aa15.52■□□□□ 0.08
VPS53-210ENST00000571456 ZNF207O43670 478 aaKnown RBP15.52■□□□□ 0.08
VPS53-210ENST00000571456 CAMLGP49069 296 aa15.52■□□□□ 0.08
VPS53-210ENST00000571456 USF2Q15853 346 aaPredicted RBP15.52■□□□□ 0.08
VPS53-210ENST00000571456 ATP5SQ99766 215 aa15.52■□□□□ 0.08
VPS53-210ENST00000571456 SPAG8Q99932 426 aaPredicted RBP15.52■□□□□ 0.08
VPS53-210ENST00000571456 DNAH1Q9P2D7 4330 aa15.52■□□□□ 0.07
VPS53-210ENST00000571456 UBE2L5PA0A1B0GUS4 154 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 HELTA6NFD8 242 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 TSPAN4O14817 238 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 GP9P14770 177 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 AP2S1P53680 142 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms