RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CCDC32Q9BV29 185 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 MS4A6AQ9H2W1 248 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 ENY2Q9NPA8 101 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 X6R8D5 127 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 FAM90A26D6RGX4 464 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 HTR2BP41595 481 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 EMP1P54849 157 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 MFAP4P55083 255 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 BSXQ3C1V8 233 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 SELENOHQ8IZQ5 122 aaKnown RBP7.94□□□□□ -1.14
VPS53-207ENST00000570510 SLC35G3Q8N808 338 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 OR10W1Q8NGF6 305 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 GINS3Q9BRX5 216 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 NSG2Q9Y328 171 aa7.94□□□□□ -1.14
VPS53-207ENST00000570510 RPS10-NUDT3A0A1W2PQS6 291 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 K7EIM0 57 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 SULT1A3P0DMM9 295 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 SULT1A4P0DMN0 295 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 NPBWR1P48145 328 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 NUTF2P61970 127 aaKnown RBP7.93□□□□□ -1.14
VPS53-207ENST00000570510 SP6Q3SY56 376 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 NMSQ5H8A3 153 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 TMEM268Q5VZI3 342 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 FAAP20Q6NZ36 180 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 RNASEH2CQ8TDP1 164 aaKnown RBP7.93□□□□□ -1.14
VPS53-207ENST00000570510 SCARB1Q8WTV0 552 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 TMEM230Q96A57 120 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 HINT2Q9BX68 163 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 U3KQ87 197 aa7.93□□□□□ -1.14
VPS53-207ENST00000570510 TRAV30A0A087WSZ9 112 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 A6NHS1 94 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 DBX1A6NMT0 343 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 I3L2K1 104 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 NDUFB6O95139 128 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 SLC25A4P12235 298 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 FAM3BP58499 235 aaPredicted RBP7.92□□□□□ -1.14
VPS53-207ENST00000570510 SUPT4H1P63272 117 aaKnown RBP7.92□□□□□ -1.14
VPS53-207ENST00000570510 SMCO1Q147U7 214 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 C2orf83Q53S99 150 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 ACTL10Q5JWF8 245 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 ETFRF1Q6IPR1 90 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 TRPT1Q86TN4 253 aaKnown RBP7.92□□□□□ -1.14
VPS53-207ENST00000570510 C1QTNF4Q9BXJ3 329 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 HSPB7Q9UBY9 170 aa7.92□□□□□ -1.14
VPS53-207ENST00000570510 TMEM189A5PLL7 270 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 KNCNA6PVL3 124 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 MED6O75586 246 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 SFT2D2O95562 160 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 GIG44P09565 113 aaPredicted RBP7.91□□□□□ -1.14
VPS53-207ENST00000570510 IL7P13232 177 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 AKR1C4P17516 323 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 C4BPBP20851 252 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 HOXA1P49639 335 aaPredicted RBP7.91□□□□□ -1.14
VPS53-207ENST00000570510 BAK1Q16611 211 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 FAM90A2PQ658T7 463 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 STXBP6Q8NFX7 210 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 LHFPL5Q8TAF8 219 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 FRZBQ92765 325 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 GPR146Q96CH1 333 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 CIB3Q96Q77 187 aaPredicted RBP7.91□□□□□ -1.14
VPS53-207ENST00000570510 SDHCQ99643 169 aaPredicted RBP7.91□□□□□ -1.14
VPS53-207ENST00000570510 TMEM231Q9H6L2 316 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 PTTG2Q9NZH5 202 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 CACNG5Q9UF02 275 aa7.91□□□□□ -1.14
VPS53-207ENST00000570510 TRAV2A0A0B4J234 112 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 IGHV3-66A0A0C4DH42 116 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 NBDYA0A0U1RRE5 68 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 TEX48A0A1B0GUV7 120 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 J3QL48 77 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 PITX3O75364 302 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 MT-CO2P00403 227 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 CTSGP08311 255 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 RNASE2P10153 161 aaKnown RBP7.9□□□□□ -1.14
VPS53-207ENST00000570510 RPP30P78346 268 aaKnown RBP7.9□□□□□ -1.14
VPS53-207ENST00000570510 OR4X1Q8NH49 305 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 ST8SIA2Q92186 375 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 ZNF414Q96IQ9 312 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 OR10C1Q96KK4 312 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 C18orf15Q96N68 181 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 KRTAP3-3Q9BYR6 98 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 KRTAP3-2Q9BYR7 98 aa7.9□□□□□ -1.14
VPS53-207ENST00000570510 WDR12Q9GZL7 423 aaKnown RBP7.9□□□□□ -1.14
VPS53-207ENST00000570510 A0A0G2JRQ6 117 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 ZNF688P0C7X2 276 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 TMED4Q7Z7H5 227 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 FAM24BQ8N5W8 94 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 SLC24A4Q8NFF2 622 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 COQ8AQ8NI60 647 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 NIPSNAP3BQ9BS92 247 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 HEYLQ9NQ87 328 aaPredicted RBP7.89□□□□□ -1.15
VPS53-207ENST00000570510 XCL2Q9UBD3 114 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 LRP1BQ9NZR2 4599 aa7.89□□□□□ -1.15
VPS53-207ENST00000570510 IGHV3OR16-12A0A075B7B8 117 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 GNG7O60262 68 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 CLN5O75503 358 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 VAMP1P23763 118 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 GPX4P36969 197 aaPredicted RBP7.88□□□□□ -1.15
VPS53-207ENST00000570510 TMEM88Q6PEY1 159 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 GSG1LQ6UXU4 331 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 ZNF600Q6ZNG1 722 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms