RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SMAD7O15105 426 aaKnown RBP8.88□□□□□ -0.99
CLK3-226ENST00000569406 NFE4Q86UQ8 179 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 AJUBAQ96IF1 538 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 LIN7CQ9NUP9 197 aaKnown RBP8.88□□□□□ -0.99
CLK3-226ENST00000569406 TMEM8BA6NDV4 472 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 RHODO00212 210 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 CSN3P07498 182 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 PQLC2Q6ZP29 291 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 DNAJC30Q96LL9 226 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 PRRG4Q9BZD6 226 aa8.88□□□□□ -0.99
CLK3-226ENST00000569406 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.87□□□□□ -0.99
CLK3-226ENST00000569406 A0A1W2PNU3 283 aaPredicted RBP8.87□□□□□ -0.99
CLK3-226ENST00000569406 C21orf140B9A014 251 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 KLK10O43240 276 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 FGF6P10767 208 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 LIFP15018 202 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 B4GALT1P15291 398 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 EDDM3BP56851 147 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 SGK494Q96LW2 274 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 SRXN1Q9BYN0 137 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 DUSP13Q9UII6 198 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 TNFRSF1AP19438 455 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 PCP2Q8IVA1 136 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 OR9G4Q8NGQ1 327 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 TMEM126AQ9H061 195 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 EDA2RQ9HAV5 297 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 C10orf128Q5T292 105 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 MOGAT3Q86VF5 341 aa8.87□□□□□ -0.99
CLK3-226ENST00000569406 ARL14EPLP0DKL9 152 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 CENPWQ5EE01 88 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 LCNL1Q6ZST4 164 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 TMEM105Q8N8V8 129 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 OR1L1Q8NH94 360 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 URB1-AS1Q96HZ7 61 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 RBP4P02753 201 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 TEPPQ6URK8 271 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 PPP1R32Q7Z5V6 425 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 ASCL2Q99929 193 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 SPRY4Q9C004 299 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 IGLL5B9A064 214 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 OR5AL1P0C617 328 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 GATA4P43694 442 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 DAZAP2Q15038 168 aaPredicted RBP8.86□□□□□ -0.99
CLK3-226ENST00000569406 TMEM78Q5T7P6 136 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 ZNF818PQ6ZRF7 136 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 GGNQ86UU5 652 aa8.86□□□□□ -0.99
CLK3-226ENST00000569406 TRAV4A0A0B4J268 109 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 RFPL3SP0C7P2 107 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 FREM1Q5H8C1 2179 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 Q6ZRM9 215 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 OR8A1Q8NGG7 326 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 TTC28Q96AY4 2481 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 PTRH2Q9Y3E5 179 aaKnown RBP8.85□□□□□ -0.99
CLK3-226ENST00000569406 TIMM9Q9Y5J7 89 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 KMT2EQ8IZD2 1858 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 KRTAP27-1Q3LI81 207 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 SPATA46Q5T0L3 261 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 SFTA2Q6UW10 78 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 OR13C6PQ8NH95 151 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 C10orf35Q96D05 121 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 DEPPQ9NTK1 212 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 HCFC1P51610 2035 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 EP300Q09472 2414 aaPredicted RBP8.85□□□□□ -0.99
CLK3-226ENST00000569406 SPTA1P02549 2419 aa8.85□□□□□ -0.99
CLK3-226ENST00000569406 IZUMO1RA6ND01 250 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 C9JAW5 83 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 E9PLD3 99 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 DHRS3O75911 302 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 ZNF808Q8N4W9 903 aaPredicted RBP8.84□□□□□ -0.99
CLK3-226ENST00000569406 TRIB1Q96RU8 372 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 HIGD1AQ9Y241 93 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 DCHS1Q96JQ0 3298 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 A0A096LPE4 126 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 A0A1W2PPZ6 126 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 A8MWL6 223 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 NCR2O95944 276 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 MOSP00540 346 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 FCER1GP30273 86 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 GNG5P63218 68 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 CCL28Q9NRJ3 127 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 PINLYPA6NC86 204 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 F8WDY8 70 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 OPRK1P41145 380 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 ZNF816Q0VGE8 651 aaPredicted RBP8.84□□□□□ -0.99
CLK3-226ENST00000569406 KLF5Q13887 457 aaPredicted RBP8.84□□□□□ -0.99
CLK3-226ENST00000569406 GDF5OSQ5U4N7 250 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 NPCDR1Q9BY65 106 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 PRO0461Q9UI25 63 aa8.84□□□□□ -0.99
CLK3-226ENST00000569406 SRD5A1P18405 259 aa8.83□□□□□ -1
CLK3-226ENST00000569406 CRYGSP22914 178 aa8.83□□□□□ -1
CLK3-226ENST00000569406 LINC01545Q5VT33 79 aa8.83□□□□□ -1
CLK3-226ENST00000569406 YTHDF2Q9Y5A9 579 aaKnown RBP8.83□□□□□ -1
CLK3-226ENST00000569406 C5orf49A4QMS7 147 aa8.83□□□□□ -1
CLK3-226ENST00000569406 DSCR4P56555 118 aaPredicted RBP8.83□□□□□ -1
CLK3-226ENST00000569406 MED13Q9UHV7 2174 aa8.83□□□□□ -1
CLK3-226ENST00000569406 TNFSF11O14788 317 aa8.83□□□□□ -1
CLK3-226ENST00000569406 DUX4L9Q6RFH8 374 aaPredicted RBP8.83□□□□□ -1
CLK3-226ENST00000569406 FGFBP3Q8TAT2 258 aa8.83□□□□□ -1
CLK3-226ENST00000569406 TMEM147Q9BVK8 224 aa8.83□□□□□ -1
CLK3-226ENST00000569406 EDN2P20800 178 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms