RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 MED6O75586 246 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 IL5P05113 134 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 USF2Q15853 346 aaPredicted RBP10.35□□□□□ -0.75
CLN3-235ENST00000568497 ACOT7LQ6ZUV0 252 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 OR51G1Q8NGK1 321 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 RETNQ9HD89 108 aa10.35□□□□□ -0.75
CLN3-235ENST00000568497 MRPL27Q9P0M9 148 aaKnown RBP10.35□□□□□ -0.75
CLN3-235ENST00000568497 TRAV14DV4A0A0A6YYC5 116 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 FAM24AA6NFZ4 105 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 DFFBO76075 338 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 PSG1P11464 419 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 RAB32Q13637 225 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 HAGHQ16775 308 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 RBPMS2Q6ZRY4 209 aaKnown RBP10.34□□□□□ -0.75
CLN3-235ENST00000568497 FAM24BQ8N5W8 94 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 STPG3Q8N7X2 389 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 SLC35E1Q96K37 410 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 FAM110AQ9BQ89 295 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 PBDC1Q9BVG4 233 aa10.34□□□□□ -0.75
CLN3-235ENST00000568497 STRAPQ9Y3F4 350 aaKnown RBP10.34□□□□□ -0.75
CLN3-235ENST00000568497 C7orf66A4D0T2 115 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 ZFP92A6NM28 416 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 IL4P05112 153 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 PRB4P10163 310 aaPredicted RBP10.33□□□□□ -0.76
CLN3-235ENST00000568497 SLC25A4P12235 298 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 ELLP55199 621 aaPredicted RBP10.33□□□□□ -0.76
CLN3-235ENST00000568497 DEFA1P59665 94 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 DEFA3P59666 94 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 RAB11AP62491 216 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 LRRC37A5PQ49AS3 106 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 TCF24Q7RTU0 167 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 RPP25LQ8N5L8 163 aaKnown RBP10.33□□□□□ -0.76
CLN3-235ENST00000568497 OR1S2Q8NGQ3 325 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 C2orf50Q96LR7 162 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 MARVELD1Q9BSK0 173 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 C11orf1Q9H5F2 150 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 TECRQ9NZ01 308 aaKnown RBP10.33□□□□□ -0.76
CLN3-235ENST00000568497 HECTD4Q9Y4D8 3996 aa10.33□□□□□ -0.76
CLN3-235ENST00000568497 OR11H12B2RN74 326 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 K7EMT4 169 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 CST7O76096 145 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 BCAP31P51572 246 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 LYZP61626 148 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 APRG1Q8IVJ8 170 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 SMIM8Q96KF7 97 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 SRD5A3Q9H8P0 318 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 DOK5Q9P104 306 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 ALG5Q9Y673 324 aa10.32□□□□□ -0.76
CLN3-235ENST00000568497 IGSF23A1L1A6 192 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 RD3LP0DJH9 198 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 GPX4P36969 197 aaPredicted RBP10.31□□□□□ -0.76
CLN3-235ENST00000568497 RPL11P62913 178 aaKnown RBP10.31□□□□□ -0.76
CLN3-235ENST00000568497 AKR1C1Q04828 323 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 IL15RAQ13261 267 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 FAM90A2PQ658T7 463 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 ETFRF1Q6IPR1 90 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 TMEM14EPQ6UXP3 125 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 GTSCR1Q86UQ5 136 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 TMEM217Q8N7C4 229 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 Q8WTZ3 238 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 MARC2Q969Z3 335 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 CIB3Q96Q77 187 aaPredicted RBP10.31□□□□□ -0.76
CLN3-235ENST00000568497 ATP6V0BQ99437 205 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 TUBA4BQ9H853 241 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 OR5AC2Q9NZP5 309 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 KMT2AQ03164 3969 aa10.31□□□□□ -0.76
CLN3-235ENST00000568497 AGRNO00468 2067 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 H0YIZ8 118 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 L7N2F9 121 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 SSNA1O43805 119 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 TOMM40O96008 361 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 NPPCP23582 126 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 P2RY1P47900 373 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 H2BFSP57053 126 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 VAMP2P63027 116 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 SLC38A11Q08AI6 406 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 ODF3L2Q3SX64 289 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 NOXA1Q86UR1 476 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 OR2K2Q8NGT1 345 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 METTL26Q96S19 204 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 VSIRQ9H7M9 311 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 GPN1Q9HCN4 374 aaPredicted RBP10.3□□□□□ -0.76
CLN3-235ENST00000568497 MGAT4CQ9UBM8 478 aa10.3□□□□□ -0.76
CLN3-235ENST00000568497 TRAV30A0A087WSZ9 112 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 RPL35AP18077 110 aaKnown RBP10.29□□□□□ -0.76
CLN3-235ENST00000568497 CAV2P51636 162 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 DEFB1P60022 68 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 YPEL3P61236 119 aaPredicted RBP10.29□□□□□ -0.76
CLN3-235ENST00000568497 THAP8Q8NA92 274 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 STXBP6Q8NFX7 210 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 GINS3Q9BRX5 216 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 RABAC1Q9UI14 185 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 DNAH10Q8IVF4 4471 aa10.29□□□□□ -0.76
CLN3-235ENST00000568497 SNRPGP15A8MWD9 76 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 TSPAN4O14817 238 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 HNRNPCP07910 306 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLN3-235ENST00000568497 CXCL3P19876 107 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 CRYBB3P26998 211 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 RPP30P78346 268 aaKnown RBP10.28□□□□□ -0.76
CLN3-235ENST00000568497 LEMD1Q68G75 181 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms