RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	CCR6	P51684	374 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	KLF9	Q13886	244 aa	Predicted RBP	12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	IL18	Q14116	193 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	GPR141	Q7Z602	305 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	OR51S1	Q8NGJ8	323 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	OR51G1	Q8NGK1	321 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	DIRAS2	Q96HU8	199 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	HSPB7	Q9UBY9	170 aa		12.16	□□□□□ -0.46
CLN3-231	ENST00000568422	HECTD4	Q9Y4D8	3996 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422		A0A0B4J2A0	478 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	ANKRD20A5P	A0PJZ0	165 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	NXPH3	O95157	252 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	NKX2-1	P43699	371 aa	Predicted RBP	12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	SMCO1	Q147U7	214 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	OR8G2P	Q6IF36	304 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	CLVS1	Q8IUQ0	354 aa	Predicted RBP	12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	LGI3	Q8N145	548 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	DTD1	Q8TEA8	209 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	RNF125	Q96EQ8	232 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	MRPS26	Q9BYN8	205 aa	Known RBP	12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	XCL2	Q9UBD3	114 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	SHPK	Q9UHJ6	478 aa		12.15	□□□□□ -0.46
CLN3-231	ENST00000568422	DNAH6	Q9C0G6	4158 aa		12.15	□□□□□ -0.47
CLN3-231	ENST00000568422	DEFB131B	A0A096LNP1	70 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	AMBP	P02760	352 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	HLA-DRB4	P13762	266 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	GPX4	P36969	197 aa	Predicted RBP	12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	SRPX	P78539	464 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	NEU1	Q99519	415 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	RSL24D1	Q9UHA3	163 aa	Known RBP	12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	HLA-DRB4	X5D2U9	266 aa		12.14	□□□□□ -0.47
CLN3-231	ENST00000568422	SMIM9	A6NGZ8	99 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	FABP1	P07148	127 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	ANXA3	P12429	323 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	ALDH3B2	P48448	385 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	SPCS2	Q15005	226 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	C12orf74	Q32Q52	190 aa		12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	CCDC59	Q9P031	241 aa	Known RBP	12.13	□□□□□ -0.47
CLN3-231	ENST00000568422	TMEM189	A5PLL7	270 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	ZFP92	A6NM28	416 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422		P0DMU3	169 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	FAM231A	P0DMU4	169 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	FAM231C	P0DMU5	169 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	ID1	P41134	155 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	C1orf194	Q5T5A4	169 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	ZNF705A	Q6ZN79	300 aa	Predicted RBP	12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	LINC00336	Q6ZUF6	198 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	RAB2B	Q8WUD1	216 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	CLUHP3	Q96NS8	147 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	BCL7B	Q9BQE9	202 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	RBKS	Q9H477	322 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	CELA1	Q9UNI1	258 aa		12.12	□□□□□ -0.47
CLN3-231	ENST00000568422	HERC2	O95714	4834 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	AKR1C4	P17516	323 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	PSMB3	P49720	205 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	SUPT4H1	P63272	117 aa	Known RBP	12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	GAMT	Q14353	236 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	SPATA31B1P	Q5VZV4	182 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	LYZL2	Q7Z4W2	148 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	DYNC2LI1	Q8TCX1	351 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	SLC35E1	Q96K37	410 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	NDUFAF3	Q9BU61	184 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	PBDC1	Q9BVG4	233 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	MCUB	Q9NWR8	336 aa		12.11	□□□□□ -0.47
CLN3-231	ENST00000568422	ZNF705F	A8MVS1	300 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	SNRPGP15	A8MWD9	76 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	ZNF705D	P0CH99	300 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	ZNF705B	P0CI00	300 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	TMBIM6	P55061	237 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	SAMD13	Q5VXD3	122 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	FOXI2	Q6ZQN5	318 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	OR1S1	Q8NH92	325 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	SAV1	Q9H4B6	383 aa	Predicted RBP	12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	PRR13	Q9NZ81	148 aa		12.1	□□□□□ -0.47
CLN3-231	ENST00000568422	TEX48	A0A1B0GUV7	120 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	DUXB	A0A1W2PPF3	345 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	SPART-AS1	P0CW21	52 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	ZNF90	Q03938	601 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	POM121L12	Q8N7R1	296 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	LINC00052	Q96N35	136 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	KRTAP17-1	Q9BYP8	105 aa		12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	WDR12	Q9GZL7	423 aa	Known RBP	12.09	□□□□□ -0.47
CLN3-231	ENST00000568422	IGKV1D-37	A0A075B6S9	117 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	ISLR	O14498	428 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	FAU	P35544	74 aa	Known RBP	12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	RAB11A	P62491	216 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	GDF5OS	Q5U4N7	250 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	ZNF767P	Q75MW2	155 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	COQ8A	Q8NI60	647 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	FAM210B	Q96KR6	192 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	SOST	Q9BQB4	213 aa		12.08	□□□□□ -0.48
CLN3-231	ENST00000568422	FABP12	A6NFH5	140 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	SOCS3	O14543	225 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	PITX3	O75364	302 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	CFD	P00746	253 aa	Predicted RBP	12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	SLC25A6	P12236	298 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	TMEM128	Q5BJH2	165 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	OR8I2	Q8N0Y5	310 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	PPP1R14B	Q96C90	147 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	TRGV9	Q99603	122 aa		12.07	□□□□□ -0.48

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