RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 DEFB131AP59861 70 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 ID3Q02535 119 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 USF2Q15853 346 aaPredicted RBP13.81□□□□□ -0.2
CLN3-227ENST00000567495 OR8G2PQ6IF36 304 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 GLMPQ8WWB7 406 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 RNF183Q96D59 192 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 MAGT1Q9H0U3 335 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 DNAH7Q8WXX0 4024 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 SNRPGP15A8MWD9 76 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 WRBO00258 174 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 LYRM1O43325 122 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 DEFB135Q30KP9 77 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 RNF125Q96EQ8 232 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 TRGV9Q99603 122 aa13.8□□□□□ -0.2
CLN3-227ENST00000567495 SEPSECSQ9HD40 501 aaKnown RBP13.8□□□□□ -0.2
CLN3-227ENST00000567495 STRAPQ9Y3F4 350 aaKnown RBP13.8□□□□□ -0.2
CLN3-227ENST00000567495 PLA2G10O15496 165 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 BUB3O43684 328 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 ADAP1O75689 374 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 CFDP00746 253 aaPredicted RBP13.79□□□□□ -0.2
CLN3-227ENST00000567495 NKX2-1P43699 371 aaPredicted RBP13.79□□□□□ -0.2
CLN3-227ENST00000567495 SPANXN5Q5MJ07 72 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 DCANP1Q8TF63 244 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 GATAD1Q8WUU5 269 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 MITD1Q8WV92 249 aa13.79□□□□□ -0.2
CLN3-227ENST00000567495 ATF4P18848 351 aaPredicted RBP13.78□□□□□ -0.2
CLN3-227ENST00000567495 ZNF124Q15973 351 aa13.78□□□□□ -0.2
CLN3-227ENST00000567495 TMEM217Q8N7C4 229 aa13.78□□□□□ -0.2
CLN3-227ENST00000567495 THAP8Q8NA92 274 aa13.78□□□□□ -0.2
CLN3-227ENST00000567495 S100ZQ8WXG8 99 aa13.78□□□□□ -0.2
CLN3-227ENST00000567495 C20orf85Q9H1P6 137 aa13.78□□□□□ -0.2
CLN3-227ENST00000567495 IGKV1D-37A0A075B6S9 117 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 SNRPD3P62318 126 aaKnown RBP13.77□□□□□ -0.21
CLN3-227ENST00000567495 ZNF90Q03938 601 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 C1orf194Q5T5A4 169 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 LEMD1Q68G75 181 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 STHQ8IWL8 128 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 FAM24BQ8N5W8 94 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 OR4D5Q8NGN0 318 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 PBDC1Q9BVG4 233 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 NRN1Q9NPD7 142 aa13.77□□□□□ -0.21
CLN3-227ENST00000567495 PRSS46E5RG02 174 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 TCRBP04435 133 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 ZNF688P0C7X2 276 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 S100A7P31151 101 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 POLR2GP62487 172 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLN3-227ENST00000567495 TMEM41BQ5BJD5 291 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 SIGLEC15Q6ZMC9 328 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 SMIM8Q96KF7 97 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 RAB40CQ96S21 281 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 FBXL17Q9UF56 701 aa13.76□□□□□ -0.21
CLN3-227ENST00000567495 IAH1Q2TAA2 248 aaPredicted RBP13.75□□□□□ -0.21
CLN3-227ENST00000567495 PSENENQ9NZ42 101 aa13.75□□□□□ -0.21
CLN3-227ENST00000567495 SSSCA1O60232 199 aa13.74□□□□□ -0.21
CLN3-227ENST00000567495 TAS2R30P59541 319 aa13.74□□□□□ -0.21
CLN3-227ENST00000567495 LYZP61626 148 aa13.74□□□□□ -0.21
CLN3-227ENST00000567495 AKR1C1Q04828 323 aa13.74□□□□□ -0.21
CLN3-227ENST00000567495 MORN3Q6PF18 240 aaPredicted RBP13.74□□□□□ -0.21
CLN3-227ENST00000567495 SLC45A2Q9UMX9 530 aa13.74□□□□□ -0.21
CLN3-227ENST00000567495 IGKV1OR2-108A0A075B7D4 117 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 A0A0J9YWU9 116 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 H3BP45 60 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 CA1P00915 261 aaPredicted RBP13.73□□□□□ -0.21
CLN3-227ENST00000567495 SPP1P10451 314 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 OR2F1Q13607 317 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 ZNF846Q147U1 533 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 MZT2BQ6NZ67 158 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 TMEM144Q7Z5S9 345 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 TRPT1Q86TN4 253 aaKnown RBP13.73□□□□□ -0.21
CLN3-227ENST00000567495 BPIFCQ8NFQ6 507 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 PPP1R14BQ96C90 147 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 NUDT15Q9NV35 164 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 GSKIPQ9P0R6 139 aa13.73□□□□□ -0.21
CLN3-227ENST00000567495 LCE6AA0A183 80 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 A6NHS1 94 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 TSC22D2O75157 780 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 PSMG4Q5JS54 123 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 SAMD13Q5VXD3 122 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 ACOT7LQ6ZUV0 252 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 ZBTB8BQ8NAP8 495 aaPredicted RBP13.72□□□□□ -0.21
CLN3-227ENST00000567495 ZNF431Q8TF32 576 aaPredicted RBP13.72□□□□□ -0.21
CLN3-227ENST00000567495 RARRES2Q99969 163 aa13.72□□□□□ -0.21
CLN3-227ENST00000567495 TRAV6A0A075B6T7 132 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 FAM240BA0A1B0GVZ2 78 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 FNDC10F2Z333 226 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 ID1P41134 155 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 ACTL10Q5JWF8 245 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 OR8I2Q8N0Y5 310 aa13.71□□□□□ -0.21
CLN3-227ENST00000567495 TENM2Q9NT68 2774 aa13.71□□□□□ -0.22
CLN3-227ENST00000567495 KNCNA6PVL3 124 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 SCGB1D2O95969 90 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 H2AFB2P0C5Z0 115 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 PAX9P55771 341 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 DLK1P80370 383 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 ASAH1Q13510 395 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 TMEM14EPQ6UXP3 125 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 OR10P1Q8NGE3 313 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 OR11H2Q8NH07 326 aa13.7□□□□□ -0.22
CLN3-227ENST00000567495 WDR12Q9GZL7 423 aaKnown RBP13.7□□□□□ -0.22
CLN3-227ENST00000567495 SMCO3A2RU48 225 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms