RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HLA-DMBP28068 263 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 SRPXP78539 464 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 SMCO1Q147U7 214 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 SIGLEC15Q6ZMC9 328 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 LGI3Q8N145 548 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 DYNC2LI1Q8TCX1 351 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 DTD1Q8TEA8 209 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 CLEC5AQ9NY25 188 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 SHPKQ9UHJ6 478 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 APLNQ9ULZ1 77 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 VPS13DQ5THJ4 4388 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 DNAH10Q8IVF4 4471 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 PSG1P11464 419 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 ANXA3P12429 323 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 TMBIM6P55061 237 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 KLF9Q13886 244 aaPredicted RBP13.55□□□□□ -0.24
CLN3-218ENST00000565688 OR51G1Q8NGK1 321 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 MCUBQ9NWR8 336 aa13.55□□□□□ -0.24
CLN3-218ENST00000565688 AKR1C4P17516 323 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR20EP86478 221 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR20CP86479 221 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR20DP86480 221 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR20BP86481 221 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR20AP86496 221 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 RNF125Q96EQ8 232 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 RBKSQ9H477 322 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 PRR13Q9NZ81 148 aa13.54□□□□□ -0.24
CLN3-218ENST00000565688 ELOA3CA0A087WX78 387 aaPredicted RBP13.53□□□□□ -0.24
CLN3-218ENST00000565688 H3BMM0 161 aa13.53□□□□□ -0.24
CLN3-218ENST00000565688 FABP1P07148 127 aa13.53□□□□□ -0.24
CLN3-218ENST00000565688 GPX4P36969 197 aaPredicted RBP13.53□□□□□ -0.24
CLN3-218ENST00000565688 SUPT4H1P63272 117 aaKnown RBP13.53□□□□□ -0.24
CLN3-218ENST00000565688 OR8G2PQ6IF36 304 aa13.53□□□□□ -0.24
CLN3-218ENST00000565688 Q6ZTC4 211 aa13.53□□□□□ -0.24
CLN3-218ENST00000565688 LYZL2Q7Z4W2 148 aa13.53□□□□□ -0.24
CLN3-218ENST00000565688 ZFP92A6NM28 416 aa13.52□□□□□ -0.25
CLN3-218ENST00000565688 NKX2-1P43699 371 aaPredicted RBP13.52□□□□□ -0.25
CLN3-218ENST00000565688 OR1S1Q8NH92 325 aa13.52□□□□□ -0.25
CLN3-218ENST00000565688 RNF126Q9BV68 326 aa13.52□□□□□ -0.25
CLN3-218ENST00000565688 FABP12A6NFH5 140 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 NOL3O60936 208 aaKnown RBP13.51□□□□□ -0.25
CLN3-218ENST00000565688 HLA-DRB4P13762 266 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 FAUP35544 74 aaKnown RBP13.51□□□□□ -0.25
CLN3-218ENST00000565688 SLC35E1Q96K37 410 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 SOSTQ9BQB4 213 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 PBDC1Q9BVG4 233 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 XCL2Q9UBD3 114 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 HLA-DRB4X5D2U9 266 aa13.51□□□□□ -0.25
CLN3-218ENST00000565688 IGHV4-4A0A075B6R2 117 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 DUXBA0A1W2PPF3 345 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 TNFSF8P32971 234 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 ID1P41134 155 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 GAMTQ14353 236 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 C1orf194Q5T5A4 169 aa13.5□□□□□ -0.25
CLN3-218ENST00000565688 SLIRPQ9GZT3 109 aaKnown RBP13.5□□□□□ -0.25
CLN3-218ENST00000565688 DEFB131BA0A096LNP1 70 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 SNRPGP15A8MWD9 76 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 AMBPP02760 352 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 PSMB3P49720 205 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 AP3S2P59780 193 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 RAB11AP62491 216 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 ZNF90Q03938 601 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 C12orf74Q32Q52 190 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 TMEM128Q5BJH2 165 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 NEU1Q99519 415 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 CELA1Q9UNI1 258 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 HECTD4Q9Y4D8 3996 aa13.48□□□□□ -0.25
CLN3-218ENST00000565688 IGKV1D-37A0A075B6S9 117 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 TMEM189A5PLL7 270 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 PITX3O75364 302 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 SLC25A6P12236 298 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 LYZP61626 148 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 SAMD13Q5VXD3 122 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 SPATA31B1PQ5VZV4 182 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 ZNF705AQ6ZN79 300 aaPredicted RBP13.47□□□□□ -0.25
CLN3-218ENST00000565688 FOXI2Q6ZQN5 318 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 MCFD2Q8NI22 146 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 CLUHP3Q96NS8 147 aa13.47□□□□□ -0.25
CLN3-218ENST00000565688 SAV1Q9H4B6 383 aaPredicted RBP13.47□□□□□ -0.25
CLN3-218ENST00000565688 SMIM9A6NGZ8 99 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 H3BMQ9 156 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 MED6O75586 246 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 TMED4Q7Z7H5 227 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 LRTM2Q8N967 370 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 COQ8AQ8NI60 647 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 PPP1R14BQ96C90 147 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 LINC00052Q96N35 136 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 TRGV9Q99603 122 aa13.46□□□□□ -0.25
CLN3-218ENST00000565688 WDR12Q9GZL7 423 aaKnown RBP13.46□□□□□ -0.25
CLN3-218ENST00000565688 ZNF705FA8MVS1 300 aaPredicted RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 CFDP00746 253 aaPredicted RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 ZNF705DP0CH99 300 aaPredicted RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 ZNF705BP0CI00 300 aaPredicted RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 RPP30P78346 268 aaKnown RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 TOMM5Q8N4H5 51 aa13.45□□□□□ -0.26
CLN3-218ENST00000565688 CIB3Q96Q77 187 aaPredicted RBP13.45□□□□□ -0.26
CLN3-218ENST00000565688 NDUFAF3Q9BU61 184 aa13.45□□□□□ -0.26
CLN3-218ENST00000565688 DNAH6Q9C0G6 4158 aa13.45□□□□□ -0.26
CLN3-218ENST00000565688 ISLRO14498 428 aa13.44□□□□□ -0.26
CLN3-218ENST00000565688 SOCS3O14543 225 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms