RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZNF90Q03938 601 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 OR51G1Q8NGK1 321 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 OR11H2Q8NH07 326 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 C11orf68Q9H3H3 251 aaKnown RBP10.83□□□□□ -0.68
CLN3-213ENST00000565047 SEPSECSQ9HD40 501 aaKnown RBP10.83□□□□□ -0.68
CLN3-213ENST00000565047 FRAS1Q86XX4 4008 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 AGRNO00468 2067 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 NUPR2A6NF83 97 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 KNCNA6PVL3 124 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 IFNA4P05014 189 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 C4BPBP20851 252 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 BTCP35070 178 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 AP2S1P53680 142 aaPredicted RBP10.82□□□□□ -0.68
CLN3-213ENST00000565047 UBE2MP61081 183 aaKnown RBP10.82□□□□□ -0.68
CLN3-213ENST00000565047 PMS2P11Q13670 270 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 CENPSQ8N2Z9 138 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 CSNK1G2-AS1Q8NCQ2 148 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 LINC00476Q8WZB0 136 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 RNF125Q96EQ8 232 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 NARS2Q96I59 477 aaKnown RBP10.82□□□□□ -0.68
CLN3-213ENST00000565047 RAB40CQ96S21 281 aa10.82□□□□□ -0.68
CLN3-213ENST00000565047 DNAH6Q9C0G6 4158 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 C9orf170A2RU37 121 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 CXorf65A6NEN9 183 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 NDUFB6O95139 128 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 IAPPP10997 89 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 DHRS2Q13268 280 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 SPANXN2Q5MJ10 180 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 GGNBP1Q5YKI7 109 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 STHQ8IWL8 128 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 TMEM217Q8N7C4 229 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 THAP8Q8NA92 274 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 Q8NAQ8 132 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 FLVCR2Q9UPI3 526 aa10.81□□□□□ -0.68
CLN3-213ENST00000565047 ZNF705EA8MWA4 302 aaPredicted RBP10.8□□□□□ -0.68
CLN3-213ENST00000565047 SYNGR2O43760 224 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 HOXB5P09067 269 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 EIF2B2P49770 351 aaKnown RBP10.8□□□□□ -0.68
CLN3-213ENST00000565047 ID3Q02535 119 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 OR8G2PQ6IF36 304 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 SIGLEC15Q6ZMC9 328 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 TRGV9Q99603 122 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 MAGT1Q9H0U3 335 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 NRN1Q9NPD7 142 aa10.8□□□□□ -0.68
CLN3-213ENST00000565047 NAP1L6A6NFF2 107 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 ZFP92A6NM28 416 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 SOCS3O14543 225 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 ADAP1O75689 374 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 RBMY1A1P0DJD3 496 aaKnown RBP10.79□□□□□ -0.68
CLN3-213ENST00000565047 RBMY1CP0DJD4 496 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 SPP1P10451 314 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 RBMY1FQ15415 496 aaKnown RBP10.79□□□□□ -0.68
CLN3-213ENST00000565047 TMEM41BQ5BJD5 291 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 PSMG4Q5JS54 123 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 ACTL10Q5JWF8 245 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 MORN3Q6PF18 240 aaPredicted RBP10.79□□□□□ -0.68
CLN3-213ENST00000565047 PHLDA1Q8WV24 401 aaPredicted RBP10.79□□□□□ -0.68
CLN3-213ENST00000565047 C17orf77Q96MU5 243 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 X6R8D5 127 aa10.79□□□□□ -0.68
CLN3-213ENST00000565047 PMS2P5A8MQ11 134 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 H3BMM0 161 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 MED6O75586 246 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 NANOS2P60321 138 aaKnown RBP10.78□□□□□ -0.68
CLN3-213ENST00000565047 RAB11AP62491 216 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 TMEM182Q6ZP80 229 aaPredicted RBP10.78□□□□□ -0.68
CLN3-213ENST00000565047 OR4D5Q8NGN0 318 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 SLC35E1Q96K37 410 aa10.78□□□□□ -0.68
CLN3-213ENST00000565047 CIB3Q96Q77 187 aaPredicted RBP10.78□□□□□ -0.68
CLN3-213ENST00000565047 WDR12Q9GZL7 423 aaKnown RBP10.78□□□□□ -0.68
CLN3-213ENST00000565047 WRBO00258 174 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 DEFB4AO15263 64 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 PLA2G10O15496 165 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 OR4E1P0C645 316 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 IL7P13232 177 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 C1orf194Q5T5A4 169 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 C11orf45Q8TAV5 145 aa10.77□□□□□ -0.69
CLN3-213ENST00000565047 SNRPGP15A8MWD9 76 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 NKX2-1P43699 371 aaPredicted RBP10.76□□□□□ -0.69
CLN3-213ENST00000565047 PAX9P55771 341 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 POLR2GP62487 172 aaKnown RBP eCLIP10.76□□□□□ -0.69
CLN3-213ENST00000565047 OR2F1Q13607 317 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 GDF5OSQ5U4N7 250 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 PBDC1Q9BVG4 233 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 HRH4Q9H3N8 390 aa10.76□□□□□ -0.69
CLN3-213ENST00000565047 KLK5Q9Y337 293 aaPredicted RBP10.76□□□□□ -0.69
CLN3-213ENST00000565047 IGHV4-28A0A0C4DH34 117 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 HLA-DRB4P13762 266 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 ANXA7P20073 488 aaKnown RBP10.75□□□□□ -0.69
CLN3-213ENST00000565047 NUP62P37198 522 aaPredicted RBP10.75□□□□□ -0.69
CLN3-213ENST00000565047 DEFB1P60022 68 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 SNRPD3P62318 126 aaKnown RBP10.75□□□□□ -0.69
CLN3-213ENST00000565047 SPANXN5Q5MJ07 72 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 TRIQKQ629K1 86 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 GSG1LQ6UXU4 331 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 C7orf50Q9BRJ6 194 aaKnown RBP10.75□□□□□ -0.69
CLN3-213ENST00000565047 CLEC5AQ9NY25 188 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 HLA-DRB4X5D2U9 266 aa10.75□□□□□ -0.69
CLN3-213ENST00000565047 ELOA3CA0A087WX78 387 aaPredicted RBP10.74□□□□□ -0.69
CLN3-213ENST00000565047 H3BP45 60 aa10.74□□□□□ -0.69
CLN3-213ENST00000565047 MIFP14174 115 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms