RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RGPD3A6NKT7 1758 aaPredicted RBP3.95□□□□□ -1.78
VPS35-205ENST00000563984 SIPA1L3O60292 1781 aaPredicted RBP3.95□□□□□ -1.78
VPS35-205ENST00000563984 TRBV7-6A0A0J9YX20 115 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 LOC107986453A0A1B0GWG9 222 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 DPRXA6NFQ7 191 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 OOSP1A8MZH6 123 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 LINC01619G3V211 115 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 C16orf97H3BN30 126 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 SLC25A1P53007 311 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 GFERP55789 205 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 RPS11P62280 158 aaKnown RBP eCLIP3.95□□□□□ -1.78
VPS35-205ENST00000563984 PAX8Q06710 450 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 EBI3Q14213 229 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 TMEM30BQ3MIR4 351 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 CENPWQ5EE01 88 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 SLC25A30Q5SVS4 291 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 GFRALQ6UXV0 394 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 TMEM91Q6ZNR0 172 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 GVQW1Q8N7I0 195 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 OR2T10Q8NGZ9 312 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 LMX1AQ8TE12 382 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 PLA2G2FQ9BZM2 168 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 COL24A1Q17RW2 1714 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 TULP4Q9NRJ4 1543 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 SCN10AQ9Y5Y9 1956 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 TRPM7Q96QT4 1865 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 RGPD8O14715 1765 aaPredicted RBP3.94□□□□□ -1.78
VPS35-205ENST00000563984 RGPD5Q99666 1765 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 PXDNQ92626 1479 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 WI2-2373I1.2A0A1W2PRP0 233 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 GRIFINA4D1Z8 144 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ZNF727A8MUV8 499 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 C9JQL5 133 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 K7N7A8 449 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 GNGT2O14610 69 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 NDUFS5O43920 106 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 PDCD6O75340 191 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ZNF737O75373 536 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 COX7CP15954 63 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 P2RX1P51575 399 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 QRFPP83859 136 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ETDBQ3ZM63 59 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 LINC01545Q5VT33 79 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 C1orf140Q5VVS0 124 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 LINC00305Q7Z4B0 112 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ODF3L1Q8IXM7 274 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ZNF101Q8IZC7 436 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 DRAM1Q8N682 238 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 Q8N976 141 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 ZNF564Q8TBZ8 553 aaPredicted RBP3.94□□□□□ -1.78
VPS35-205ENST00000563984 FGF11Q92914 225 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 NABP1Q96AH0 204 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 RBMXL1Q96E39 390 aaKnown RBP3.94□□□□□ -1.78
VPS35-205ENST00000563984 KCNS1Q96KK3 526 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 C18orf15Q96N68 181 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 POLR2J2Q9GZM3 115 aaKnown RBP3.94□□□□□ -1.78
VPS35-205ENST00000563984 GABARAPL1Q9H0R8 117 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 DEFB127Q9H1M4 99 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 SERP1Q9Y6X1 66 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 SLIT2O94813 1529 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 BRCA1P38398 1863 aaKnown RBP3.94□□□□□ -1.78
VPS35-205ENST00000563984 DSPPQ9NZW4 1301 aa3.94□□□□□ -1.78
VPS35-205ENST00000563984 KIAA1210Q9ULL0 1709 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 PLXNA4Q9HCM2 1894 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 A0A1B0GXF2 115 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 IRGMA1A4Y4 181 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 C15orf62A8K5M9 175 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 EPM2AB3EWF7 344 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 M0R129 80 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 SS18L1O75177 396 aaPredicted RBP3.93□□□□□ -1.78
VPS35-205ENST00000563984 RBP4P02753 201 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 SMIM13P0DJ93 91 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 VDAC1P21796 283 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 HLA-DMBP28068 263 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 FAUP35544 74 aaKnown RBP3.93□□□□□ -1.78
VPS35-205ENST00000563984 MYCNOSP40205 109 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 PTGDSP41222 190 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 CXCL5P42830 114 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 KRTDAPP60985 99 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 FOXF1Q12946 379 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 ELOCQ15369 112 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 CST6Q15828 149 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 PVRIGQ6DKI7 326 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 KRTAP5-2Q701N4 177 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 GTSCR1Q86UQ5 136 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 SLC22A24Q8N4F4 322 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 LINC00311Q8N616 119 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 RNF182Q8N6D2 247 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 MRPL30Q8TCC3 161 aaKnown RBP3.93□□□□□ -1.78
VPS35-205ENST00000563984 PGLYRP2Q96PD5 576 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 AMELYQ99218 206 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 CST11Q9H112 138 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 LIME1Q9H400 295 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 GNB4Q9HAV0 340 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 SLC39A9Q9NUM3 307 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 TAAR3PQ9P1P4 343 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 ZNF835Q9Y2P0 537 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 DNAJC15Q9Y5T4 150 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 FANCMQ8IYD8 2048 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 PIK3C2AO00443 1686 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms