RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 IGHV4-28A0A0C4DH34 117 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 DUXBA0A1W2PPF3 345 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 FAM90A26D6RGX4 464 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 PSG1P11464 419 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 ANXA3P12429 323 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 AKR1C4P17516 323 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 GPX4P36969 197 aaPredicted RBP12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 ACY3Q96HD9 319 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 RBKSQ9H477 322 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 MCUBQ9NWR8 336 aa12.48□□□□□ -0.41
VPS9D1-203ENST00000563798 AGRNO00468 2067 aa12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 PITX3O75364 302 aa12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 NUP62P37198 522 aaPredicted RBP12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 SNRPD3P62318 126 aaKnown RBP12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 KLF9Q13886 244 aaPredicted RBP12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 PSMG4Q5JS54 123 aa12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 OR8G2PQ6IF36 304 aa12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 OR51G1Q8NGK1 321 aa12.47□□□□□ -0.41
VPS9D1-203ENST00000563798 VPS13DQ5THJ4 4388 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 FAUP35544 74 aaKnown RBP12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 TMEM128Q5BJH2 165 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 SIGLEC15Q6ZMC9 328 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 LRTM2Q8N967 370 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 MCFD2Q8NI22 146 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 DEDD2Q8WXF8 326 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 TRIM63Q969Q1 353 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 RNF125Q96EQ8 232 aa12.46□□□□□ -0.41
VPS9D1-203ENST00000563798 IGKV1D-37A0A075B6S9 117 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 H3BMM0 161 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 NOL3O60936 208 aaKnown RBP12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 SLC25A6P12236 298 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 GAMTQ14353 236 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 C1QTNF4Q9BXJ3 329 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 PFDN2Q9UHV9 154 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 TBC1D24Q9ULP9 559 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 APLNQ9ULZ1 77 aa12.45□□□□□ -0.42
VPS9D1-203ENST00000563798 FRAS1Q86XX4 4008 aa12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 ELOA3CA0A087WX78 387 aaPredicted RBP12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 DEDDO75618 318 aa12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 NKX2-1P43699 371 aaPredicted RBP12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 AP3S2P59780 193 aa12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 NUTF2P61970 127 aaKnown RBP12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 C1orf194Q5T5A4 169 aa12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 OR1S1Q8NH92 325 aa12.44□□□□□ -0.42
VPS9D1-203ENST00000563798 DNAH10Q8IVF4 4471 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 FABP1P07148 127 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 HLA-DRB4P13762 266 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 HLA-DMBP28068 263 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 SLC35E1Q96K37 410 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 CLUHP3Q96NS8 147 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 SLC25A21Q9BQT8 299 aaPredicted RBP12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 CLEC5AQ9NY25 188 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 V9GYH0 126 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 HLA-DRB4X5D2U9 266 aa12.43□□□□□ -0.42
VPS9D1-203ENST00000563798 TRAV10A0A0B4J240 114 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 ZFP92A6NM28 416 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 PRR20EP86478 221 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 PRR20CP86479 221 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 PRR20DP86480 221 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 PRR20BP86481 221 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 PRR20AP86496 221 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 ZNF90Q03938 601 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 TOMM5Q8N4H5 51 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 TRGV9Q99603 122 aa12.42□□□□□ -0.42
VPS9D1-203ENST00000563798 SNRPGP15A8MWD9 76 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 IGLL5B9A064 214 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 SOCS3O14543 225 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 ZNF79Q15937 498 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 Q6ZTC4 211 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 TMED4Q7Z7H5 227 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 THAP8Q8NA92 274 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 NEU1Q99519 415 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 TMED3Q9Y3Q3 217 aa12.41□□□□□ -0.42
VPS9D1-203ENST00000563798 MED6O75586 246 aa12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 PSMB3P49720 205 aa12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 RAB11AP62491 216 aa12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 PYDC2Q56P42 97 aa12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 ZNF705AQ6ZN79 300 aaPredicted RBP12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 CIB3Q96Q77 187 aaPredicted RBP12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 PBDC1Q9BVG4 233 aa12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 WDR12Q9GZL7 423 aaKnown RBP12.4□□□□□ -0.42
VPS9D1-203ENST00000563798 IGKV1OR2-108A0A075B7D4 117 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 PRSS46E5RG02 174 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 SFT2D2O95562 160 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 CFDP00746 253 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 ID1P41134 155 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 FOXI2Q6ZQN5 318 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 CCDC190Q86UF4 302 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 RNF126Q9BV68 326 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 SAV1Q9H4B6 383 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 XCL2Q9UBD3 114 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 SLC45A2Q9UMX9 530 aa12.39□□□□□ -0.43
VPS9D1-203ENST00000563798 ZNF705FA8MVS1 300 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 ZNF705DP0CH99 300 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 ZNF705BP0CI00 300 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 VAMP1P23763 118 aa12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 C12orf74Q32Q52 190 aa12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 SAMD13Q5VXD3 122 aa12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 SPATA31B1PQ5VZV4 182 aa12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 CENPSQ8N2Z9 138 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms