RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SP9P0CG40 484 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 WT1P19544 449 aaPredicted RBP11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 DIAPH2-AS1Q14236 149 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 LEPROTL1O95214 131 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 FSTL3O95633 263 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 MYCNOSP40205 109 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 VAMP3Q15836 100 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 FBLN7Q53RD9 439 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 LINC00322Q6ZN03 302 aaPredicted RBP11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 THAP8Q8NA92 274 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 OR4C5Q8NGB2 326 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 H1FXQ92522 213 aaKnown RBP11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 MBD3L4A6NDZ8 208 aaPredicted RBP11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 MBD3L3A6NE82 208 aaPredicted RBP11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 MBD3L5A6NJ08 208 aaPredicted RBP11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 INS-IGF2F8WCM5 200 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 HCP5Q6MZN7 132 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 LINC00173Q6ZV60 143 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 MBD3L2Q8NHZ7 208 aaPredicted RBP11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 ZNF835Q9Y2P0 537 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 IGHV1-24A0A0C4DH33 117 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 hDV102S1A0JD36 115 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 SLC25A17O43808 307 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 ERASQ7Z444 233 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 RPRMLQ8N4K4 120 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 OR4A5Q8NH83 315 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 GTSF1Q8WW33 167 aa11.24□□□□□ -0.61
VPS9D1-202ENST00000561976 IGHV3-21A0A0B4J1V1 117 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 H0Y8G0 127 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 SYS1-DBNDD2H3BUS1 97 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 CHEK1O14757 476 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 MPV17L2Q567V2 206 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 PLA2G2CQ5R387 149 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 WASHC3Q9Y3C0 194 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 TIMM8BQ9Y5J9 83 aaPredicted RBP11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 DYSFO75923 2080 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 HSBP1L1C9JCN9 74 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 ENSAO43768 121 aaKnown RBP11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 APELAP0DMC3 54 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 FAM120AOSQ5T036 256 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 TEX36Q5VZQ5 186 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 CLEC2AQ6UVW9 174 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 IGFL2Q6UWQ7 119 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 CHCHD1Q96BP2 118 aaKnown RBP11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 SMIM12Q96EX1 92 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 ST20Q9HBF5 79 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 KLF12Q9Y4X4 402 aa11.23□□□□□ -0.61
VPS9D1-202ENST00000561976 A0A1W2PPI3 338 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 C22orf46C9J442 243 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 VMA21Q3ZAQ7 101 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 TMEM200BQ69YZ2 307 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 ZCCHC24Q8N2G6 241 aaKnown RBP11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 C5orf17Q8NAS9 161 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 C22orf15Q8WYQ4 148 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 FMC1Q96HJ9 113 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 MLST8Q9BVC4 326 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 TPSG1Q9NRR2 321 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 DEFB109BQ30KR1 87 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 RUSC1-AS1Q66K80 236 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 DEFB123Q8N688 67 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 TMEM191AQ9H0A3 160 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 RP1L1Q8IWN7 2480 aaPredicted RBP11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 FAM87AP0C7U9 286 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 MEF2CQ06413 473 aaPredicted RBP11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 RBPMS2Q6ZRY4 209 aaKnown RBP11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 PRSS22Q9GZN4 317 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 Q9H3A6 140 aa11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 SOX21Q9Y651 276 aaPredicted RBP11.22□□□□□ -0.61
VPS9D1-202ENST00000561976 IGHV2-70DA0A0C4DH43 119 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 NUDT3O95989 172 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 ZNF138P52744 262 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 RBX1P62877 108 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 FAM27E3Q08E93 113 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 SLC25A34Q6PIV7 304 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 LOXL4Q96JB6 756 aa11.21□□□□□ -0.61
VPS9D1-202ENST00000561976 PLXNB1O43157 2135 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 LOC105371242A0A075B767 164 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 IGHV3-72A0A0B4J1Y9 119 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 CRXO43186 299 aaPredicted RBP11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 TOX4O94842 621 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 LTAP01374 205 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 IGLV2-23P01705 113 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 TCRAP04437 139 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 TNFRSF1AP19438 455 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 COL8A1P27658 744 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 CT83Q5H943 113 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 C22orf34Q6ZV56 151 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 TMEM186Q96B77 213 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 MCRIP2Q9BUT9 160 aaKnown RBP11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 MAP1LC3CQ9BXW4 147 aa11.21□□□□□ -0.62
VPS9D1-202ENST00000561976 C19orf71A6NCJ1 209 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 CSN3P07498 182 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 CD40P25942 277 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 RITA1Q96K30 269 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 TRAV8-1A0A0A6YYK1 113 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 LRRC10Q5BKY1 277 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 ZNF492Q9P255 531 aa11.2□□□□□ -0.62
VPS9D1-202ENST00000561976 ZFHX4Q86UP3 3567 aa11.19□□□□□ -0.62
VPS9D1-202ENST00000561976 LOC102724200A0A096LPH7 203 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms