RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 JMJD8Q96S16 334 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 ATMQ13315 3056 aa9.21□□□□□ -0.94
CUX1-218ENST00000560541 GAGE12HA6NDE8 117 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 CGB3P0DN86 165 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 CGB7P0DN87 165 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 ID1P41134 155 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 APOA2P02652 100 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 REG1BP48304 166 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 SMIM20Q8N5G0 67 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 SPTBN2O15020 2390 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 AREGP15514 252 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 USF1P22415 310 aaPredicted RBP9.2□□□□□ -0.94
CUX1-218ENST00000560541 TIGITQ495A1 244 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 SSBP3Q9BWW4 388 aaPredicted RBP9.2□□□□□ -0.94
CUX1-218ENST00000560541 HILPDAQ9Y5L2 63 aa9.2□□□□□ -0.94
CUX1-218ENST00000560541 PIEZO2Q9H5I5 2752 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TRAV17A0A0B4J275 112 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 ZNF324O75467 553 aaPredicted RBP9.19□□□□□ -0.94
CUX1-218ENST00000560541 CT45A6P0DMU7 189 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 CT45A5P0DMU8 189 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 CT45A7P0DMV0 189 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 FOXE3Q13461 319 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 DEFB109BQ30KR1 87 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 OR2T6Q8NHC8 308 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TRBV7-9A0A0J9YWB2 115 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TEX50A0A1B0GTY4 177 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 CD5LO43866 347 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 LHBP01229 141 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 PF4V1P10720 104 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 ZNF474Q6S9Z5 364 aaPredicted RBP9.19□□□□□ -0.94
CUX1-218ENST00000560541 C22orf34Q6ZV56 151 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 NEGR1Q7Z3B1 354 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 MCRIP2Q9BUT9 160 aaKnown RBP9.19□□□□□ -0.94
CUX1-218ENST00000560541 NPFFR1Q9GZQ6 430 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TMEM167BQ9NRX6 74 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TECRQ9NZ01 308 aaKnown RBP9.19□□□□□ -0.94
CUX1-218ENST00000560541 TANC2Q9HCD6 1990 aa9.19□□□□□ -0.94
CUX1-218ENST00000560541 TACC2O95359 2948 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 RAI1Q7Z5J4 1906 aaPredicted RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 SAA1P0DJI8 122 aaPredicted RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 SRIP30626 198 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 SSBP2P81877 361 aaPredicted RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 PRCDQ00LT1 54 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 ZCCHC24Q8N2G6 241 aaKnown RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 PRNDQ9UKY0 176 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 UPK2O00526 184 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 TNFAIP6P98066 277 aaPredicted RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 PSG3Q16557 428 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 IBA57Q5T440 356 aaKnown RBP9.18□□□□□ -0.94
CUX1-218ENST00000560541 FAM168AQ92567 244 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 RNF7Q9UBF6 113 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 E7EUB6 86 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 H0Y8G0 127 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 PYYP10082 97 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 CFHR2P36980 270 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 CX3CL1P78423 397 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 UFSP1Q6NVU6 142 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 TMEM136Q6ZRR5 245 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 KIR3DL3Q8N743 410 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 KCNS1Q96KK3 526 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 GAFA1Q96PS6 74 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 SFXN3Q9BWM7 321 aa9.18□□□□□ -0.94
CUX1-218ENST00000560541 OTOGLQ3ZCN5 2332 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 TRAV9-1A0A075B6T8 112 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 PLAUP00749 431 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 UBE2L3P68036 154 aaKnown RBP9.17□□□□□ -0.94
CUX1-218ENST00000560541 RTL8BQ17RB0 113 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 C10orf55Q5SWW7 151 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 C12orf54Q6X4T0 127 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 SPATA12Q7Z6I5 190 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 OR2K2Q8NGT1 345 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 RNF183Q96D59 192 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 MRAP2Q96G30 205 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 SGK494Q96LW2 274 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 GNB1LQ9BYB4 327 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 PSG8Q9UQ74 426 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 POLEQ07864 2286 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 IGLV2-8P01709 118 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 GLRXP35754 106 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 CCL8P80075 99 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 ATP5G2Q06055 141 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 PMCHL1Q16048 86 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 SLC25A34Q6PIV7 304 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 MRPL20Q9BYC9 149 aaKnown RBP9.17□□□□□ -0.94
CUX1-218ENST00000560541 SLC25A10Q9UBX3 287 aaPredicted RBP9.17□□□□□ -0.94
CUX1-218ENST00000560541 LY96Q9Y6Y9 160 aa9.17□□□□□ -0.94
CUX1-218ENST00000560541 RIF1Q5UIP0 2472 aaKnown RBP9.16□□□□□ -0.94
CUX1-218ENST00000560541 B5MCH6 92 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 IGHV1-46P01743 117 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 RNASE2P10153 161 aaKnown RBP9.16□□□□□ -0.94
CUX1-218ENST00000560541 Q0VG73 95 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 EBLN2Q6P2I7 272 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 HARBI1Q96MB7 349 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 BMPR1BO00238 502 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 CCL3L1P16619 93 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 TCTAP57738 103 aa9.16□□□□□ -0.94
CUX1-218ENST00000560541 CD300EQ496F6 205 aaPredicted RBP9.16□□□□□ -0.94
CUX1-218ENST00000560541 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.16□□□□□ -0.94
CUX1-218ENST00000560541 DEFB124Q8NES8 71 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms