RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 IGKV1OR2-108A0A075B7D4 117 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 FAM90A26D6RGX4 464 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 IFNA4P05014 189 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 OR2F1Q13607 317 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 BAK1Q16611 211 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 TMEM128Q5BJH2 165 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 ETFRF1Q6IPR1 90 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 RPP25LQ8N5L8 163 aaKnown RBP12.87□□□□□ -0.35
HDDC3-205ENST00000559898 SDHCQ99643 169 aaPredicted RBP12.87□□□□□ -0.35
HDDC3-205ENST00000559898 PBDC1Q9BVG4 233 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 SRRQ9GZT4 340 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 C11orf68Q9H3H3 251 aaKnown RBP12.87□□□□□ -0.35
HDDC3-205ENST00000559898 FLVCR2Q9UPI3 526 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 X6R8D5 127 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 DNAH10Q8IVF4 4471 aa12.87□□□□□ -0.35
HDDC3-205ENST00000559898 IGHV4-28A0A0C4DH34 117 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 DEDDO75618 318 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 SFT2D2O95562 160 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 HOXB5P09067 269 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 ANXA3P12429 323 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 GDF5OSQ5U4N7 250 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 SIGLEC15Q6ZMC9 328 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 CSNK1G2-AS1Q8NCQ2 148 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 RNF125Q96EQ8 232 aa12.86□□□□□ -0.35
HDDC3-205ENST00000559898 NARS2Q96I59 477 aaKnown RBP12.86□□□□□ -0.35
HDDC3-205ENST00000559898 WDR12Q9GZL7 423 aaKnown RBP12.86□□□□□ -0.35
HDDC3-205ENST00000559898 ELOA3CA0A087WX78 387 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-205ENST00000559898 HELTA6NFD8 242 aa12.85□□□□□ -0.35
HDDC3-205ENST00000559898 SCGB2A1O75556 95 aa12.85□□□□□ -0.35
HDDC3-205ENST00000559898 FAUP35544 74 aaKnown RBP12.85□□□□□ -0.35
HDDC3-205ENST00000559898 TMEM182Q6ZP80 229 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-205ENST00000559898 LRTM2Q8N967 370 aa12.85□□□□□ -0.35
HDDC3-205ENST00000559898 C11orf45Q8TAV5 145 aa12.85□□□□□ -0.35
HDDC3-205ENST00000559898 PAIP2BQ9ULR5 123 aaKnown RBP12.85□□□□□ -0.35
HDDC3-205ENST00000559898 LINC00854A0A1B0GVQ3 168 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 ZFP92A6NM28 416 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 PRSS46E5RG02 174 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 ADAP1O75689 374 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 SRPXP78539 464 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 GGNBP1Q5YKI7 109 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 TMEM217Q8N7C4 229 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 DNAH6Q9C0G6 4158 aa12.84□□□□□ -0.35
HDDC3-205ENST00000559898 WRBO00258 174 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 GATA2P23769 480 aaPredicted RBP12.83□□□□□ -0.36
HDDC3-205ENST00000559898 S100A5P33763 92 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 GPX4P36969 197 aaPredicted RBP12.83□□□□□ -0.36
HDDC3-205ENST00000559898 EIF2B2P49770 351 aaKnown RBP12.83□□□□□ -0.36
HDDC3-205ENST00000559898 AP3S2P59780 193 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 LYZP61626 148 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 NOXA1Q86UR1 476 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 SLC35E1Q96K37 410 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 C17orf77Q96MU5 243 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 NRN1Q9NPD7 142 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 CELA1Q9UNI1 258 aa12.83□□□□□ -0.36
HDDC3-205ENST00000559898 DUXBA0A1W2PPF3 345 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 ZNF705EA8MWA4 302 aaPredicted RBP12.82□□□□□ -0.36
HDDC3-205ENST00000559898 H3BP45 60 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 BTCP35070 178 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 FXYD7P58549 80 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 PRR20EP86478 221 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 PRR20CP86479 221 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 PRR20DP86480 221 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 PRR20BP86481 221 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 PRR20AP86496 221 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 ZNF767PQ75MW2 155 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 CENPSQ8N2Z9 138 aa12.82□□□□□ -0.36
HDDC3-205ENST00000559898 SLC25A21Q9BQT8 299 aaPredicted RBP12.82□□□□□ -0.36
HDDC3-205ENST00000559898 KLK5Q9Y337 293 aaPredicted RBP12.82□□□□□ -0.36
HDDC3-205ENST00000559898 H3BMM0 161 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 SOCS3O14543 225 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 CCNKO75909 580 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 IGKV3-20P01619 116 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 SPP1P10451 314 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 SCRT1Q9BWW7 348 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 XCL2Q9UBD3 114 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 CACFD1Q9UGQ2 172 aa12.81□□□□□ -0.36
HDDC3-205ENST00000559898 C9orf170A2RU37 121 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 SYNGR2O43760 224 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 SLC25A6P12236 298 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 AP2S1P53680 142 aaPredicted RBP12.8□□□□□ -0.36
HDDC3-205ENST00000559898 MORN3Q6PF18 240 aaPredicted RBP12.8□□□□□ -0.36
HDDC3-205ENST00000559898 THAP8Q8NA92 274 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 C20orf173Q96LM9 149 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 TMED3Q9Y3Q3 217 aa12.8□□□□□ -0.36
HDDC3-205ENST00000559898 F6UB75 175 aa12.79□□□□□ -0.36
HDDC3-205ENST00000559898 UBE2MP61081 183 aaKnown RBP12.79□□□□□ -0.36
HDDC3-205ENST00000559898 POLR2GP62487 172 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDDC3-205ENST00000559898 SPANXN5Q5MJ07 72 aa12.79□□□□□ -0.36
HDDC3-205ENST00000559898 Q6ZTC4 211 aa12.79□□□□□ -0.36
HDDC3-205ENST00000559898 LINC00052Q96N35 136 aa12.79□□□□□ -0.36
HDDC3-205ENST00000559898 TRGV9Q99603 122 aa12.79□□□□□ -0.36
HDDC3-205ENST00000559898 NDUFB6O95139 128 aa12.78□□□□□ -0.36
HDDC3-205ENST00000559898 ANXA7P20073 488 aaKnown RBP12.78□□□□□ -0.36
HDDC3-205ENST00000559898 HLA-DMBP28068 263 aa12.78□□□□□ -0.36
HDDC3-205ENST00000559898 OR8G2PQ6IF36 304 aa12.78□□□□□ -0.36
HDDC3-205ENST00000559898 TBC1D24Q9ULP9 559 aa12.78□□□□□ -0.36
HDDC3-205ENST00000559898 APLNQ9ULZ1 77 aa12.78□□□□□ -0.36
HDDC3-205ENST00000559898 PMS2P5A8MQ11 134 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 PRB4P10163 310 aaPredicted RBP12.77□□□□□ -0.37
HDDC3-205ENST00000559898 HLA-DRB4P13762 266 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms