RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IGSF23A1L1A6 192 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 A6NDN8 102 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 FAM24AA6NFZ4 105 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR2T8A6NH00 312 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 ARL5CA6NH57 179 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 KIR3DP1A8MWS1 328 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SLC17A3O00476 420 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 FCN1O00602 326 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SIVA1O15304 175 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CRXO43186 299 aaPredicted RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF207O43670 478 aaKnown RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 PDE6DO43924 150 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CXCL13O43927 109 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GNG7O60262 68 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 HAND1O96004 215 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CA1P00915 261 aaPredicted RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 HBZP02008 142 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 C3orf79P0CE67 100 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 STAG3L2P0CL84 134 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF728P0DKX0 622 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 NPY1RP25929 384 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 S100GP29377 79 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SSTR5P35346 364 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OPRM1P35372 400 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF93P35789 620 aaPredicted RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 P2RY2P41231 377 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CCR2P41597 374 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GUCA1AP43080 201 aaPredicted RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CA7P43166 264 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SPINT3P49223 89 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 PSMB3P49720 205 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GNG4P50150 75 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 DAP3P51398 398 aaKnown RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 PSG9Q00887 426 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 HIST1H1AQ02539 215 aaPredicted RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 HSD52Q0P140 79 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 PSG5Q15238 335 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 IGFBP7Q16270 282 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 LRRC75BQ2VPJ9 315 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 C6orf226Q5I0X4 101 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SLC48A1Q6P1K1 146 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 RASL11AQ6T310 242 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 Q6ZS92 163 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 FA2HQ7L5A8 372 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 BAGE3Q86Y29 109 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 BAGE2Q86Y30 109 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 TSTD1Q8NFU3 115 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR10G3Q8NGC4 313 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR8B3Q8NGG8 313 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR5AR1Q8NGP9 310 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR1N2Q8NGR9 330 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR6K6Q8NGW6 343 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 C18orf32Q8TCD1 76 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 RNF133Q8WVZ7 376 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 BORCS7Q96B45 105 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 C8orf44Q96CB5 159 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GPR82Q96P67 336 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 OR8B2Q96RD0 313 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 NMNAT3Q96T66 252 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GPER1Q99527 375 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 CITED1Q99966 193 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SFXN3Q9BWM7 321 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SAMD10Q9BYL1 202 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 COMMD5Q9GZQ3 224 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 HES4Q9HCC6 221 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 NPVFQ9HCQ7 196 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 MRPL16Q9NX20 251 aaKnown RBP1.95□□□□□ -2.1
VPS13C-208ENST00000559119 TAS2R4Q9NYW5 299 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 SIGLEC8Q9NYZ4 499 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 IL36BQ9NZH7 164 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 GNG13Q9P2W3 67 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 POLR1DQ9Y2S0 133 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 POLDIP2Q9Y2S7 368 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 R4GMQ9 66 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 DOCK4Q8N1I0 1966 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 FRMPD3Q5JV73 1810 aa1.95□□□□□ -2.1
VPS13C-208ENST00000559119 PLXNA4Q9HCM2 1894 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TNS1Q9HBL0 1735 aaKnown RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 MCM3APO60318 1980 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 PLXNB2O15031 1838 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TRAV8-6A0A0B4J262 113 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CTXND1A0A1B0GTU2 59 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 LOC107986453A0A1B0GWG9 222 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 hADV38S2A0JD32 116 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ODAMA1E959 279 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CEBPZOSA8MTT3 80 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 F8W1H4 67 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ATP5LO75964 103 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 MPZL1O95297 269 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CA2P00918 260 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 BGLAPP02818 100 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ASAH2BP0C7U1 165 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 SMIM10L1P0DMW3 83 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 COX5AP20674 150 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 HIST1H1TP22492 207 aaPredicted RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 F2RP25116 425 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 RPS12P25398 132 aaKnown RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CRYBB3P26998 211 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 IL12BP29460 328 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF83P51522 516 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms