RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 IGHV3-66A0A0C4DH42 116 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 PSG1P11464 419 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 GBGT1Q8N5D6 347 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 RNF125Q96EQ8 232 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 RAB40CQ96S21 281 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 TRGV9Q99603 122 aa15.33■□□□□ 0.04
CCDC88C-210ENST00000555995 TRAV6A0A075B6T7 132 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 MPTX1A8MV57 137 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 POLR2GP62487 172 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 USF2Q15853 346 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 Q6ZWC4 215 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 STPG3Q8N7X2 389 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 STXBP6Q8NFX7 210 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 ZNF431Q8TF32 576 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 MAP6D1Q9H9H5 199 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 EDA2RQ9HAV5 297 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 PSENENQ9NZ42 101 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 TP53TG1Q9Y2A0 90 aa15.32■□□□□ 0.04
CCDC88C-210ENST00000555995 SSSCA1O60232 199 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 H2AFB2P0C5Z0 115 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 S100A7P31151 101 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 TAS2R30P59541 319 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 C16orf54Q6UWD8 224 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 THAP8Q8NA92 274 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 ZBTB8BQ8NAP8 495 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 SMIM8Q96KF7 97 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 DNAH7Q8WXX0 4024 aa15.31■□□□□ 0.04
CCDC88C-210ENST00000555995 SNRPGP15A8MWD9 76 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 PRSS46E5RG02 174 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 H3BP45 60 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 UPK1BO75841 260 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 SCGB1D2O95969 90 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 AKR1C1Q04828 323 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 WFDC3Q8IUB2 231 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 LILRB2Q8N423 598 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 IL17DQ8TAD2 202 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 ENKURQ8TC29 256 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 GLMPQ8WWB7 406 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 RETNQ9HD89 108 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 FBXL17Q9UF56 701 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 TBC1D24Q9ULP9 559 aa15.3■□□□□ 0.04
CCDC88C-210ENST00000555995 IGKV1D-37A0A075B6S9 117 aa15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 TSC22D2O75157 780 aa15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 LYL1P12980 280 aa15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 C12orf45Q8N5I9 185 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 PBDC1Q9BVG4 233 aa15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 GSKIPQ9P0R6 139 aa15.29■□□□□ 0.04
CCDC88C-210ENST00000555995 K7EQG2 157 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 BUB3O43684 328 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 SIGLEC15Q6ZMC9 328 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 ACOT7LQ6ZUV0 252 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 APRG1Q8IVJ8 170 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 SEPSECSQ9HD40 501 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 SLC45A2Q9UMX9 530 aa15.28■□□□□ 0.04
CCDC88C-210ENST00000555995 DEFB131AP59861 70 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 LYZP61626 148 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 ZNF90Q03938 601 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 C1orf194Q5T5A4 169 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 TMEM144Q7Z5S9 345 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 BPIFCQ8NFQ6 507 aa15.27■□□□□ 0.04
CCDC88C-210ENST00000555995 FNDC10F2Z333 226 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 IL5P05113 134 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 RPL35AP18077 110 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 SNRPD3P62318 126 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 DLK1P80370 383 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 TMEM14EPQ6UXP3 125 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 OR10P1Q8NGE3 313 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 DCANP1Q8TF63 244 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 PPP1R14BQ96C90 147 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 SEC22CQ9BRL7 303 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 GPN1Q9HCN4 374 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 NRN1Q9NPD7 142 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 MGAT4CQ9UBM8 478 aa15.26■□□□□ 0.03
CCDC88C-210ENST00000555995 C5orf51A6NDU8 294 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 FAM25EA8MYX2 175 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 L7N2F9 121 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 SPRY2O43597 315 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 DEFA1P59665 94 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 DEFA3P59666 94 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 VAMP2P63027 116 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 SAMD13Q5VXD3 122 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 STHQ8IWL8 128 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 OVOL2Q9BRP0 275 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 CSTL1Q9H114 145 aa15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 RCL1Q9Y2P8 373 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-210ENST00000555995 IGKV1OR2-108A0A075B7D4 117 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 SMCO3A2RU48 225 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 PRAF2O60831 178 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 MBPP02686 304 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 PVALBP20472 110 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 SELENOTP62341 195 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 OR2F1Q13607 317 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 DEFB135Q30KP9 77 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 CASC10Q5T4H9 136 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 GSG1LQ6UXU4 331 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 S100A7AQ86SG5 101 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 C2orf50Q96LR7 162 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 NBEAL2Q6ZNJ1 2754 aa15.24■□□□□ 0.03
CCDC88C-210ENST00000555995 CCSO14618 274 aa15.23■□□□□ 0.03
CCDC88C-210ENST00000555995 ZNF688P0C7X2 276 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms