RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 KRTDAPP60985 99 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 PRSS33Q8NF86 280 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 FAM103A1Q9BTL3 118 aaKnown RBP10.79□□□□□ -0.68
SHMT2-222ENST00000555774 INSIG2Q9Y5U4 225 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 IGHV3-72A0A0B4J1Y9 119 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 GNG5P63218 68 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 SLAQ13239 276 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF705AQ6ZN79 300 aaPredicted RBP10.79□□□□□ -0.68
SHMT2-222ENST00000555774 PPP1R27Q86WC6 154 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 C18orf32Q8TCD1 76 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 VKORC1Q9BQB6 163 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 MLST8Q9BVC4 326 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 TMEM14CQ9P0S9 112 aa10.79□□□□□ -0.68
SHMT2-222ENST00000555774 LOC400499M0QZD8 3231 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 TEX22C9J3V5 150 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 TCAPO15273 167 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 PLAUP00749 431 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 PMCHP20382 165 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 NBL1P41271 181 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 SPACA3Q8IXA5 215 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 NEU1Q99519 415 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 PRRC2CQ9Y520 2896 aaKnown RBP10.78□□□□□ -0.68
SHMT2-222ENST00000555774 A0A1B0GXF2 115 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 LTAP01374 205 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 ZNF841Q6ZN19 808 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 BLNKQ8WV28 456 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 RPP21Q9H633 154 aaKnown RBP10.78□□□□□ -0.68
SHMT2-222ENST00000555774 HIGD1AQ9Y241 93 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 PAM16Q9Y3D7 125 aa10.78□□□□□ -0.68
SHMT2-222ENST00000555774 HIGD1CA8MV81 97 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 TDRG1Q3Y452 100 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 FAM162BQ5T6X4 162 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 PRR27Q6MZM9 219 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 NIT1Q86X76 327 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 PRSS22Q9GZN4 317 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 GFRA4Q9GZZ7 299 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 OTORQ9NRC9 128 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 RNF114Q9Y508 228 aa10.77□□□□□ -0.69
SHMT2-222ENST00000555774 A8MWL6 223 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 TCRAP04437 139 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 CNTFRP26992 372 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 RUSC1-AS1Q66K80 236 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 BORCS7Q96B45 105 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 Q9H3A6 140 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 EP300Q09472 2414 aaPredicted RBP10.76□□□□□ -0.69
SHMT2-222ENST00000555774 TRBV6-1A0A0K0K1D8 114 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.76□□□□□ -0.69
SHMT2-222ENST00000555774 FAM231BA6NCW3 169 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 MMDQ15546 238 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 GDF5OSQ5U4N7 250 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 RPEQ96AT9 228 aa10.76□□□□□ -0.69
SHMT2-222ENST00000555774 ZFHX4Q86UP3 3567 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 PPIAL4CA0A0B4J2A2 164 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 C19orf71A6NCJ1 209 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 IGLC1P0CG04 106 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 PPIAL4GP0DN37 164 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 CTRLP40313 264 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 SRSF12Q8WXF0 261 aaKnown RBP10.75□□□□□ -0.69
SHMT2-222ENST00000555774 ALKBH7Q9BT30 221 aaPredicted RBP10.75□□□□□ -0.69
SHMT2-222ENST00000555774 CUL9Q8IWT3 2517 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 DSPP15924 2871 aaKnown RBP10.75□□□□□ -0.69
SHMT2-222ENST00000555774 LY6LH3BQJ8 138 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 I3L2K1 104 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 FAM87AP0C7U9 286 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 C3orf79P0CE67 100 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 HBBP68871 147 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 RNF24Q9Y225 148 aa10.75□□□□□ -0.69
SHMT2-222ENST00000555774 P01737 135 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 RPLP1P05386 114 aaKnown RBP10.74□□□□□ -0.69
SHMT2-222ENST00000555774 HSBP1O75506 76 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 PMCHL1Q16048 86 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 FBXL19-AS1Q494R0 122 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 PRR30Q53SZ7 412 aaPredicted RBP10.74□□□□□ -0.69
SHMT2-222ENST00000555774 OR8B3Q8NGG8 313 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 DAZAP1Q96EP5 407 aaKnown RBP10.74□□□□□ -0.69
SHMT2-222ENST00000555774 OR8B2Q96RD0 313 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 RASL11BQ9BPW5 248 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 SLC25A39Q9BZJ4 359 aaPredicted RBP10.74□□□□□ -0.69
SHMT2-222ENST00000555774 FBXL15Q9H469 300 aa10.74□□□□□ -0.69
SHMT2-222ENST00000555774 NPIPB6E9PJ23 425 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 PSG1P11464 419 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 LYZP61626 148 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 SPATA45Q537H7 98 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 Q86TA4 180 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 MUC15Q8N387 334 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 KLHDC1Q8N7A1 406 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 LY6G5BQ8NDX9 201 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 RPH3ALQ9UNE2 315 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 ICE1Q9Y2F5 2266 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 K7ENP7 123 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 HOXB4P17483 251 aaPredicted RBP10.73□□□□□ -0.69
SHMT2-222ENST00000555774 COX7A1P24310 79 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 UQCR10Q9UDW1 63 aa10.73□□□□□ -0.69
SHMT2-222ENST00000555774 IGHV3-21A0A0B4J1V1 117 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 VWC2LB2RUY7 222 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 LIPFP07098 398 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 NTF3P20783 257 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 CAMPP49913 170 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 ASPHD1Q5U4P2 390 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 CYB5R2Q6BCY4 276 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms