RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PRSS46E5RG02 174 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 BUB3O43684 328 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 FABP1P07148 127 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 OR4E1P0C645 316 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 PSG1P11464 419 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 RPL35AP18077 110 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 RPL11P62913 178 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 ID3Q02535 119 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 FAM24BQ8N5W8 94 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 TRGV9Q99603 122 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 RABAC1Q9UI14 185 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 HOXB5P09067 269 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 DEFB131AP59861 70 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 ZNF124Q15973 351 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 THAP8Q8NA92 274 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 RNF125Q96EQ8 232 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 PFDN2Q9UHV9 154 aa11.79□□□□□ -0.52
CCDC88C-209ENST00000554872 ZFP92A6NM28 416 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 CFDP00746 253 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 IAPPP10997 89 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 TMEM41BQ5BJD5 291 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 STXBP6Q8NFX7 210 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 OR4D5Q8NGN0 318 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 FLVCR2Q9UPI3 526 aa11.78□□□□□ -0.52
CCDC88C-209ENST00000554872 PLA2G10O15496 165 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 IFNA21P01568 189 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 C1orf194Q5T5A4 169 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 TRPT1Q86TN4 253 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 TMEM217Q8N7C4 229 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 MITD1Q8WV92 249 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 CCDC32Q9BV29 185 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 NRN1Q9NPD7 142 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 SLC45A2Q9UMX9 530 aa11.77□□□□□ -0.53
CCDC88C-209ENST00000554872 IGKV1OR2-108A0A075B7D4 117 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 ADAP1O75689 374 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 SPP1P10451 314 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 ANXA7P20073 488 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 ZNF90Q03938 601 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 MORN3Q6PF18 240 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 SIGLEC15Q6ZMC9 328 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 MAGT1Q9H0U3 335 aa11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 C11orf68Q9H3H3 251 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 STRAPQ9Y3F4 350 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-209ENST00000554872 SACSQ9NZJ4 4579 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 A0A0J9YWU9 116 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 SNRPGP15A8MWD9 76 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 WRBO00258 174 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 LYRM1O43325 122 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 NKX2-1P43699 371 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 C4orf46Q504U0 113 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 LEMD1Q68G75 181 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 STHQ8IWL8 128 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 C20orf85Q9H1P6 137 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 FBXL17Q9UF56 701 aa11.75□□□□□ -0.53
CCDC88C-209ENST00000554872 FNDC10F2Z333 226 aa11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 CA1P00915 261 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 ZNF688P0C7X2 276 aa11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 TAS2R30P59541 319 aa11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 SNRPD3P62318 126 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 SMIM8Q96KF7 97 aa11.74□□□□□ -0.53
CCDC88C-209ENST00000554872 LINC00854A0A1B0GVQ3 168 aa11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 GIG44P09565 113 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 POLR2GP62487 172 aaKnown RBP eCLIP11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 SPANXN5Q5MJ07 72 aa11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 SAMD13Q5VXD3 122 aa11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 RAB40CQ96S21 281 aa11.73□□□□□ -0.53
CCDC88C-209ENST00000554872 NUPR2A6NF83 97 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 PMS2P5A8MQ11 134 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 JTBO76095 146 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 TCRBP04435 133 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 EWSR1Q01844 656 aaKnown RBP eCLIP11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 IAH1Q2TAA2 248 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 ACOT7LQ6ZUV0 252 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 TMEM144Q7Z5S9 345 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 RARRES2Q99969 163 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 PBDC1Q9BVG4 233 aa11.72□□□□□ -0.53
CCDC88C-209ENST00000554872 H3BP45 60 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 K7EPK0 472 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 SOCS3O14543 225 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 TSC22D2O75157 780 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 S100A7P31151 101 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 PAX9P55771 341 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 LYZP61626 148 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 PSMG4Q5JS54 123 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 TMEM14EPQ6UXP3 125 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 ZBTB8BQ8NAP8 495 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 OR11H2Q8NH07 326 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 S100ZQ8WXG8 99 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 CLUHP3Q96NS8 147 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 PSENENQ9NZ42 101 aa11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 PAIP2BQ9ULR5 123 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-209ENST00000554872 RYR2Q92736 4967 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 ZNF705EA8MWA4 302 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 SSSCA1O60232 199 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 PSMB3P49720 205 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 DLK1P80370 383 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 ACTL10Q5JWF8 245 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 BPIFCQ8NFQ6 507 aa11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 RCL1Q9Y2P8 373 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-209ENST00000554872 A6NHS1 94 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms