RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 HRH4Q9H3N8 390 aa9.29□□□□□ -0.92
LINC00643-202ENST00000553426 SEPSECSQ9HD40 501 aaKnown RBP9.29□□□□□ -0.92
LINC00643-202ENST00000553426 NRN1Q9NPD7 142 aa9.29□□□□□ -0.92
LINC00643-202ENST00000553426 HSPB7Q9UBY9 170 aa9.29□□□□□ -0.92
LINC00643-202ENST00000553426 TBC1D24Q9ULP9 559 aa9.29□□□□□ -0.92
LINC00643-202ENST00000553426 IGHV4-28A0A0C4DH34 117 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 ZFP92A6NM28 416 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 PSG1P11464 419 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 KLF9Q13886 244 aaPredicted RBP9.28□□□□□ -0.92
LINC00643-202ENST00000553426 USF2Q15853 346 aaPredicted RBP9.28□□□□□ -0.92
LINC00643-202ENST00000553426 LYZL2Q7Z4W2 148 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 Q8NAQ8 132 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 TMEM170AQ8WVE7 144 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 SLC35E1Q96K37 410 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 PBDC1Q9BVG4 233 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 RBKSQ9H477 322 aa9.28□□□□□ -0.92
LINC00643-202ENST00000553426 ZNF705EA8MWA4 302 aaPredicted RBP9.27□□□□□ -0.93
LINC00643-202ENST00000553426 IGLL5B9A064 214 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 FAM90A26D6RGX4 464 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 BUB3O43684 328 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 TNFSF8P32971 234 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 GPX4P36969 197 aaPredicted RBP9.27□□□□□ -0.93
LINC00643-202ENST00000553426 RAB11AP62491 216 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 RPP25LQ8N5L8 163 aaKnown RBP9.27□□□□□ -0.93
LINC00643-202ENST00000553426 MCFD2Q8NI22 146 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 RNF125Q96EQ8 232 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 PRR13Q9NZ81 148 aa9.27□□□□□ -0.93
LINC00643-202ENST00000553426 DUXBA0A1W2PPF3 345 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 DEDDO75618 318 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 GIG44P09565 113 aaPredicted RBP9.26□□□□□ -0.93
LINC00643-202ENST00000553426 C4BPBP20851 252 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 HLA-DMBP28068 263 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 ID1P41134 155 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 TMEM128Q5BJH2 165 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 OR8G2PQ6IF36 304 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 TMED4Q7Z7H5 227 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 TOMM5Q8N4H5 51 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 SLIRPQ9GZT3 109 aaKnown RBP9.26□□□□□ -0.93
LINC00643-202ENST00000553426 CLEC5AQ9NY25 188 aa9.26□□□□□ -0.93
LINC00643-202ENST00000553426 TRAV10A0A0B4J240 114 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 SNRPGP15A8MWD9 76 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 H3BMQ9 156 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 MED6O75586 246 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 RBMY1A1P0DJD3 496 aaKnown RBP9.25□□□□□ -0.93
LINC00643-202ENST00000553426 RBMY1CP0DJD4 496 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 S100A5P33763 92 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 SUPT4H1P63272 117 aaKnown RBP9.25□□□□□ -0.93
LINC00643-202ENST00000553426 RPP30P78346 268 aaKnown RBP9.25□□□□□ -0.93
LINC00643-202ENST00000553426 RBMY1FQ15415 496 aaKnown RBP9.25□□□□□ -0.93
LINC00643-202ENST00000553426 PYDC2Q56P42 97 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 PPP1R14BQ96C90 147 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 SOSTQ9BQB4 213 aa9.25□□□□□ -0.93
LINC00643-202ENST00000553426 PAIP2BQ9ULR5 123 aaKnown RBP9.25□□□□□ -0.93
LINC00643-202ENST00000553426 AGRNO00468 2067 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 VAMP1P23763 118 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 NKX2-1P43699 371 aaPredicted RBP9.24□□□□□ -0.93
LINC00643-202ENST00000553426 LYZP61626 148 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 GAMTQ14353 236 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 CSNK1G2-AS1Q8NCQ2 148 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 DEDD2Q8WXF8 326 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 LINC00052Q96N35 136 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 CIB3Q96Q77 187 aaPredicted RBP9.24□□□□□ -0.93
LINC00643-202ENST00000553426 SLC25A21Q9BQT8 299 aaPredicted RBP9.24□□□□□ -0.93
LINC00643-202ENST00000553426 XCL2Q9UBD3 114 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 X6R8D5 127 aa9.24□□□□□ -0.93
LINC00643-202ENST00000553426 H3BMM0 161 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 CFDP00746 253 aaPredicted RBP9.23□□□□□ -0.93
LINC00643-202ENST00000553426 SLC25A6P12236 298 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 HLA-DRB4P13762 266 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 S100A7P31151 101 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 ZNF90Q03938 601 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 C1orf194Q5T5A4 169 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 SAMD13Q5VXD3 122 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 COQ8AQ8NI60 647 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 APLNQ9ULZ1 77 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 TMED3Q9Y3Q3 217 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 HLA-DRB4X5D2U9 266 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 VPS13DQ5THJ4 4388 aa9.23□□□□□ -0.93
LINC00643-202ENST00000553426 ELOA3CA0A087WX78 387 aaPredicted RBP9.22□□□□□ -0.93
LINC00643-202ENST00000553426 CCDC160A6NGH7 325 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 IAPPP10997 89 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 PSMB3P49720 205 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 GGNBP1Q5YKI7 109 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 Q6ZTC4 211 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 OR8I2Q8N0Y5 310 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 TRGV9Q99603 122 aa9.22□□□□□ -0.93
LINC00643-202ENST00000553426 PITX3O75364 302 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 OR2F1Q13607 317 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 SPATA31B1PQ5VZV4 182 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 FOXI2Q6ZQN5 318 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 LRTM2Q8N967 370 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 RNF126Q9BV68 326 aa9.21□□□□□ -0.94
LINC00643-202ENST00000553426 IGHV4-4A0A075B6R2 117 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 IGKV1D-37A0A075B6S9 117 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 DEFB131BA0A096LNP1 70 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 TMEM189A5PLL7 270 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 SMIM9A6NGZ8 99 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 SYNGR2O43760 224 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 IGKV3-20P01619 116 aa9.2□□□□□ -0.94
LINC00643-202ENST00000553426 GALR1P47211 349 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms