RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 SPOCK3Q9BQ16 436 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MESP1Q9BRJ9 268 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 IGHV1-3A0A0C4DH29 117 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 DMRTA1Q5VZB9 504 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 TRPM7Q96QT4 1865 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MBD3L4A6NDZ8 208 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MBD3L3A6NE82 208 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MBD3L5A6NJ08 208 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-208ENST00000553289 IGKCP01834 107 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 PCP4P48539 62 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 Q6P435 159 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 LINC01551Q86U37 167 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MBD3L2Q8NHZ7 208 aaPredicted RBP9.5□□□□□ -0.89
SYNE2-208ENST00000553289 IFI27L1Q96BM0 104 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 MGST2Q99735 147 aa9.5□□□□□ -0.89
SYNE2-208ENST00000553289 SEC11AP67812 179 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 LYPD1Q8N2G4 141 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 ZCCHC24Q8N2G6 241 aaKnown RBP9.49□□□□□ -0.89
SYNE2-208ENST00000553289 RNF182Q8N6D2 247 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 LINC00587B1AMM8 73 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 TYMSP04818 313 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 RPP25LQ8N5L8 163 aaKnown RBP9.49□□□□□ -0.89
SYNE2-208ENST00000553289 TRBV7-9A0A0J9YWB2 115 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 ITGB1BP1O14713 200 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 IGHG3P01860 377 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 B3GALT5-AS1P59052 145 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 SRSF8Q9BRL6 282 aaKnown RBP9.49□□□□□ -0.89
SYNE2-208ENST00000553289 SLC25A39Q9BZJ4 359 aaPredicted RBP9.49□□□□□ -0.89
SYNE2-208ENST00000553289 CHTOPQ9Y3Y2 248 aaKnown RBP9.49□□□□□ -0.89
SYNE2-208ENST00000553289 Q0VFX4 171 aa9.49□□□□□ -0.89
SYNE2-208ENST00000553289 PSG1P11464 419 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 TDGF1P13385 188 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 C20orf204Q6ZNR8 217 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 OR9G4Q8NGQ1 327 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 ORAOV1Q8WV07 137 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 H0YJW9 148 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 TNFSF13O75888 250 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 TCRAP04437 139 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 HSD52Q0P140 79 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 TOMM7Q9P0U1 55 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 ANK1P16157 1881 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 LYNX1G3V0Z9 82 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 H3BUT2 72 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 LYNX1P0DP58 116 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 PLNP26678 52 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 FBLN7Q53RD9 439 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 C9orf139Q6ZV77 190 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 REG4Q9BYZ8 158 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 SEPSECSQ9HD40 501 aaKnown RBP9.48□□□□□ -0.89
SYNE2-208ENST00000553289 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 MLNRO43193 412 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 ERVK11-1P61568 191 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 ZNF585BQ52M93 769 aa9.48□□□□□ -0.89
SYNE2-208ENST00000553289 ZSWIM8A7E2V4 1837 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 TRBV7-1A0A0A6YYK4 115 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 CXCL1P09341 107 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 BMPERQ8N8U9 685 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 CD24P25063 80 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 BEND2Q8NDZ0 799 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 GAFA1Q96PS6 74 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 TRAV40A0A0B4J280 105 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 PMS2P5A8MQ11 134 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 LAGE3Q14657 143 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 DPH3Q96FX2 82 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 NHP2Q9NX24 153 aaKnown RBP9.47□□□□□ -0.89
SYNE2-208ENST00000553289 AMBPP02760 352 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 C15orf32Q32M92 178 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 VMO1Q7Z5L0 202 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 GLMPQ8WWB7 406 aa9.47□□□□□ -0.89
SYNE2-208ENST00000553289 CEP290O15078 2479 aa9.46□□□□□ -0.89
SYNE2-208ENST00000553289 ACTL10Q5JWF8 245 aa9.46□□□□□ -0.89
SYNE2-208ENST00000553289 C10orf55Q5SWW7 151 aa9.46□□□□□ -0.89
SYNE2-208ENST00000553289 HOXA3O43365 443 aaPredicted RBP9.46□□□□□ -0.89
SYNE2-208ENST00000553289 C5orf64Q2M2E5 130 aa9.46□□□□□ -0.89
SYNE2-208ENST00000553289 METRNQ9UJH8 293 aa9.46□□□□□ -0.89
SYNE2-208ENST00000553289 CA1P00915 261 aaPredicted RBP9.46□□□□□ -0.9
SYNE2-208ENST00000553289 CD28P10747 220 aa9.46□□□□□ -0.9
SYNE2-208ENST00000553289 SPATA31B1PQ5VZV4 182 aa9.46□□□□□ -0.9
SYNE2-208ENST00000553289 FREM3P0C091 2139 aa9.46□□□□□ -0.9
SYNE2-208ENST00000553289 SELLP14151 372 aa9.46□□□□□ -0.9
SYNE2-208ENST00000553289 ST6GALNAC3Q8NDV1 305 aa9.46□□□□□ -0.9
SYNE2-208ENST00000553289 NPIPB5A8MRT5 1133 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 ETV2O00321 342 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-208ENST00000553289 ZNF138P52744 262 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 KIR3DL3Q8N743 410 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 LINC00477Q96M19 166 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 MRPL27Q9P0M9 148 aaKnown RBP9.45□□□□□ -0.9
SYNE2-208ENST00000553289 ZNF815PA8K554 130 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 DTX2Q86UW9 622 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 USMG5Q96IX5 58 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 SCRT1Q9BWW7 348 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 BUB1B-PAK6H3BSN5 160 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 SLC25A20O43772 301 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 MALP21145 153 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 KLHDC3Q9BQ90 382 aa9.45□□□□□ -0.9
SYNE2-208ENST00000553289 TRIOBPQ9H2D6 2365 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 LINC00473A8K010 186 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 C15orf62A8K5M9 175 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 PRB3Q04118 309 aaPredicted RBP9.44□□□□□ -0.9
SYNE2-208ENST00000553289 SIGLEC9Q9Y336 463 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms