RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 YTHDF2Q9Y5A9 579 aaKnown RBP6.22□□□□□ -1.41
LIMA1-216ENST00000552909 DYSFO75923 2080 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 WNK2Q9Y3S1 2297 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 TRAV8-6A0A0B4J262 113 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 C2orf70A6NJV1 201 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 LRRC30A6NM36 301 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 NPIPB11E5RHQ5 1161 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 C3orf80F5H4A9 247 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-216ENST00000552909 WNT9BO14905 357 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 SYNGR1O43759 233 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 SSTR5P35346 364 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 GNG4P50150 75 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 TCL1AP56279 114 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 GTF2H5Q6ZYL4 71 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 MKXQ8IYA7 352 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 TMEM70Q9BUB7 260 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 MTCH1Q9NZJ7 389 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 IL36RNQ9UBH0 155 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 TP73-AS1Q9UF72 201 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 ARL2-SNX15V9GYD0 113 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 ARHGAP32A7KAX9 2087 aa6.21□□□□□ -1.41
LIMA1-216ENST00000552909 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-216ENST00000552909 OR4C46A6NHA9 309 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 TRAPPC2LH3BP13 241 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 CDIPTO14735 213 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 RHBDL1O75783 438 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 MT-CO2P00403 227 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 SLC25A16P16260 332 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 USF1P22415 310 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-216ENST00000552909 OPRK1P41145 380 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 CENPWQ5EE01 88 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 WDR86Q86TI4 376 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 OR2Z1Q8NG97 314 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 OR1B1Q8NGR6 318 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 ZDHHC16Q969W1 377 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 TMEM186Q96B77 213 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF488Q96MN9 340 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 PIMREGQ9BSJ6 248 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 SAP30LQ9HAJ7 183 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF331Q9NQX6 463 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-216ENST00000552909 OSTCQ9NRP0 149 aa6.21□□□□□ -1.42
LIMA1-216ENST00000552909 RRHO14718 337 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 MPDU1O75352 247 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 GATA2P23769 480 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 G6PCP35575 357 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 LGALS7P47929 136 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 LOXL1Q08397 574 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 FXYD3Q14802 87 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 PDLIM3Q53GG5 364 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 RNASEKQ6P5S7 137 aaKnown RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 DRAM1Q8N682 238 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 CCL17Q92583 94 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 COMMD5Q9GZQ3 224 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 RNASE7Q9H1E1 156 aaKnown RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 ATRQ13535 2644 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 C7orf71A4D174 169 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 HELTA6NFD8 242 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 RAB29O14966 203 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 RBMXL2O75526 392 aaKnown RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 HLA-DRB1P01911 266 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 ADH4P08319 380 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 CRYBB3P26998 211 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 GCHFRP30047 84 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 HIST1H1AQ02539 215 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 SLAQ13239 276 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 KLF5Q13887 457 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF826PQ6ZT77 177 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 SPATA12Q7Z6I5 190 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 LINC00596Q86U02 117 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 C5orf17Q8NAS9 161 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 CHRDL1Q9BU40 450 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 PKIBQ9C010 78 aa6.2□□□□□ -1.42
LIMA1-216ENST00000552909 SMIM27A0A1W2PRY6 76 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 IZUMO1RA6ND01 250 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 INAFM1C9JVW0 142 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 J3QT63 122 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 P0C879 139 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 IGHV4-31P0DP07 118 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 SCGB1A1P11684 91 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 GPR6P46095 362 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-216ENST00000552909 REG1BP48304 166 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 TNFAIP6P98066 277 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-216ENST00000552909 HOXA4Q00056 320 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF816Q0VGE8 651 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-216ENST00000552909 TIGITQ495A1 244 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 PRAMEF6Q5VXH4 476 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 UFSP1Q6NVU6 142 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 RASL11AQ6T310 242 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 PQLC2Q6ZP29 291 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 C11orf53Q8IXP5 236 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 OR1N2Q8NGR9 330 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 ITLN1Q8WWA0 313 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 AP1S3Q96PC3 154 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 OR2V2Q96R30 315 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 TNFRSF19Q9NS68 423 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 SERTAD4Q9NUC0 356 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 TECRQ9NZ01 308 aaKnown RBP6.19□□□□□ -1.42
LIMA1-216ENST00000552909 OR51B2Q9Y5P1 312 aa6.19□□□□□ -1.42
LIMA1-216ENST00000552909 TANC2Q9HCD6 1990 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 304 ms