RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CCL13Q99616 98 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 MEGF9Q9H1U4 602 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 ZNF71Q9NQZ8 489 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 AMMECR1Q9Y4X0 333 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 ANKHD1Q8IWZ3 2542 aaKnown RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 TRGV8A0A0C4DH27 118 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 A0A1B0GXF2 115 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 TMEM238C9JI98 176 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 PPIAL4DF5H284 164 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 CRXO43186 299 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 MT-CO2P00403 227 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 CSN3P07498 182 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 FAM106CPP0CH98 169 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 UQCRFS1P47985 274 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 UBE2L3P68036 154 aaKnown RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 RPL19P84098 196 aaKnown RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 FAM106AQ4KMX7 169 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 ZNF329Q86UD4 541 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 MDS2Q8NDY4 140 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 WIPF2Q8TF74 440 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 FNDC4Q9H6D8 234 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 SAP30LQ9HAJ7 183 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 SCRT2Q9NQ03 307 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 TMEM167BQ9NRX6 74 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 SLC25A10Q9UBX3 287 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-214ENST00000552783 OR51B2Q9Y5P1 312 aa3.93□□□□□ -1.78
LIMA1-214ENST00000552783 CREBBPQ92793 2442 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 TOX4O94842 621 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 FXYD7P58549 80 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 TNFAIP6P98066 277 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-214ENST00000552783 RPRMLQ8N4K4 120 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 PGLYRP4Q96LB8 373 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 COMMD5Q9GZQ3 224 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 DYNLRB1Q9NP97 96 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 A0A1W2PRE2 83 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 FAM231BA6NCW3 169 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 J3QR06 171 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 OVOL3O00110 214 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 OR2J3O76001 311 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 FSTL3O95633 263 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 C8orf88P0DMB2 117 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 KIR2DL2P43627 348 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-214ENST00000552783 MZT1Q08AG7 82 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 FAM27E3Q08E93 113 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 C17orf58Q2M2W7 97 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 C10orf55Q5SWW7 151 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 SLC25A34Q6PIV7 304 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 BLNKQ8WV28 456 aa3.92□□□□□ -1.78
LIMA1-214ENST00000552783 FOXA2Q9Y261 457 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-214ENST00000552783 TRAV8-1A0A0A6YYK1 113 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 IGHV3-21A0A0B4J1V1 117 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 IGHV3-72A0A0B4J1Y9 119 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 TEX50A0A1B0GTY4 177 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 LEPROTL1O95214 131 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 MOSP00540 346 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 IGLC1P0CG04 106 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 FAM216BQ8N7L0 139 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 OR10X1Q8NGY0 326 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 PRR7Q8TB68 274 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 HILPDAQ9Y5L2 63 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 CHD8Q9HCK8 2581 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 FAM90A9PA6NNJ1 464 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 PRR33A8MZF0 331 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 FNDC10F2Z333 226 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 PEX7O00628 323 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 ZNF207O43670 478 aaKnown RBP3.91□□□□□ -1.78
LIMA1-214ENST00000552783 ADH4P08319 380 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 RNASE2P10153 161 aaKnown RBP3.91□□□□□ -1.78
LIMA1-214ENST00000552783 LOXL1Q08397 574 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-214ENST00000552783 CLEC2AQ6UVW9 174 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 PRSS57Q6UWY2 283 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 OR4S2Q8NH73 311 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 FXYD5Q96DB9 178 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 GRAMD2BQ96HH9 432 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 CHRDL1Q9BU40 450 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 TMUB1Q9BVT8 246 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 ST20Q9HBF5 79 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 CALYQ9NYX4 217 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 SPTBN4Q9H254 2564 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 IGHV1-18A0A0C4DH31 117 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 C7orf71A4D174 169 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 ZNF785A8K8V0 405 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 MGST3O14880 152 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 ZNF883P0CG24 379 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 WT1P19544 449 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-214ENST00000552783 PLGLAQ15195 96 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 GCSAMQ8N6F7 178 aa3.91□□□□□ -1.78
LIMA1-214ENST00000552783 IGKV1D-37A0A075B6S9 117 aa3.9□□□□□ -1.78
LIMA1-214ENST00000552783 DIAPH2-AS1Q14236 149 aa3.9□□□□□ -1.78
LIMA1-214ENST00000552783 OR1B1Q8NGR6 318 aa3.9□□□□□ -1.78
LIMA1-214ENST00000552783 COL25A1Q9BXS0 654 aaPredicted RBP3.9□□□□□ -1.78
LIMA1-214ENST00000552783 JPT1Q9UK76 154 aa3.9□□□□□ -1.78
LIMA1-214ENST00000552783 NOTCH3Q9UM47 2321 aa3.9□□□□□ -1.78
LIMA1-214ENST00000552783 CGB1A6NKQ9 187 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 K7EMI3 77 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 SAA1P0DJI8 122 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CT45A6P0DMU7 189 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CT45A5P0DMU8 189 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CT45A7P0DMV0 189 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms