RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 HIGD1AQ9Y241 93 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 Q6ZS49 121 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 OR52E5Q8NH55 327 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 IGLC7A0M8Q6 106 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 MYOZ3Q8TDC0 251 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 MRPL32Q9BYC8 188 aaKnown RBP11.74□□□□□ -0.53
LIMS1-215ENST00000544547 CHODLQ9H9P2 273 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 JPT1Q9UK76 154 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 ACACBO00763 2458 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 PINLYPA6NC86 204 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 K7EP13 123 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 RPL13AP40429 203 aaKnown RBP11.74□□□□□ -0.53
LIMS1-215ENST00000544547 ACP7Q6ZNF0 438 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 FAM169BQ8N8A8 192 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 PRELID3AQ96N28 172 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 TNCP24821 2201 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 GFRA3O60609 400 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 TGFAP01135 160 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 KIR2DL2P43627 348 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-215ENST00000544547 VWC2Q2TAL6 325 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 ODF3L1Q8IXM7 274 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 OR10W1Q8NGF6 305 aa11.74□□□□□ -0.53
LIMS1-215ENST00000544547 H7C2G1 150 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 RBX1P62877 108 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 SPACA3Q8IXA5 215 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 ZNF502Q8TBZ5 544 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 BVES-AS1Q5T3Y7 98 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 MTURNQ8N3F0 131 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 CSTL1Q9H114 145 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 PRR14LQ5THK1 2151 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 THADAQ6YHU6 1953 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 TP73-AS1Q9UF72 201 aa11.73□□□□□ -0.53
LIMS1-215ENST00000544547 SP9P0CG40 484 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 MC5RP33032 325 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 EBLN2Q6P2I7 272 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 YPEL1O60688 119 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 YPEL2Q96QA6 119 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 METRNQ9UJH8 293 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 LOC105371242A0A075B767 164 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 PPIAL4CA0A0B4J2A2 164 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 WNT2P09544 360 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 PPIAL4GP0DN37 164 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 CKS1BP61024 79 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 GCSAMQ8N6F7 178 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 OR5A1Q8NGJ0 315 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 FAM168AQ92567 244 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 SLC25A33Q9BSK2 321 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 EPDR1Q9UM22 224 aa11.72□□□□□ -0.53
LIMS1-215ENST00000544547 MYO18BQ8IUG5 2567 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 C15orf61A6NNL5 157 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 MS4A6AQ9H2W1 248 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 ETV2O00321 342 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-215ENST00000544547 IGLV3-1P01715 115 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 C2orf83Q53S99 150 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 Q6P435 159 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 GGNQ86UU5 652 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 ZGRF1Q86YA3 2104 aa11.71□□□□□ -0.53
LIMS1-215ENST00000544547 CACNA1AO00555 2505 aa11.71□□□□□ -0.54
LIMS1-215ENST00000544547 CHCHD1Q96BP2 118 aaKnown RBP11.71□□□□□ -0.54
LIMS1-215ENST00000544547 ASCL2Q99929 193 aa11.71□□□□□ -0.54
LIMS1-215ENST00000544547 TRAV8-1A0A0A6YYK1 113 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 NDUFB8O95169 186 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 MORN2Q502X0 79 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 TIMM23BQ5SRD1 257 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 BCL6BQ8N143 479 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-215ENST00000544547 FDCSPQ8NFU4 85 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 YLPM1P49750 1951 aaKnown RBP11.7□□□□□ -0.54
LIMS1-215ENST00000544547 LOC102723996A0A087X1L8 192 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 C11orf1Q9H5F2 150 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 LY96Q9Y6Y9 160 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 NUP210Q8TEM1 1887 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-215ENST00000544547 SNCGO76070 127 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 PRSS57Q6UWY2 283 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 WFDC12Q8WWY7 111 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 HSD52Q0P140 79 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 SCNM1Q9BWG6 230 aa11.7□□□□□ -0.54
LIMS1-215ENST00000544547 OR4A5Q8NH83 315 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 FOXC2Q99958 501 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 Q9H3A6 140 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 KIR3DL3Q8N743 410 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 SAA2-SAA4A0A096LPE2 208 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 GGTLC3B5MD39 225 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 SAA2P0DJI9 122 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-215ENST00000544547 PSG3Q16557 428 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 CIARTQ8N365 385 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-215ENST00000544547 MAP1LC3AQ9H492 121 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 C2orf16Q68DN1 1984 aa11.69□□□□□ -0.54
LIMS1-215ENST00000544547 MMP23AO75900 390 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 FCGR2BP31994 310 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-215ENST00000544547 LOXL3P58215 753 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 SPANXN1Q5VSR9 72 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 TTC9CQ8N5M4 171 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 PLXNB1O43157 2135 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 WNK1Q9H4A3 2382 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 C10orf55Q5SWW7 151 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 LINC00173Q6ZV60 143 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 LINC00470Q9BZP3 86 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 S4R3C0 116 aa11.68□□□□□ -0.54
LIMS1-215ENST00000544547 CGB1A6NKQ9 187 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms