RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LHFPL5Q8TAF8 219 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 ACY3Q96HD9 319 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 LINC00052Q96N35 136 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 KLK11Q9UBX7 282 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 TMED3Q9Y3Q3 217 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 DNAH5Q8TE73 4624 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 NBDYA0A0U1RRE5 68 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 SMIM31A0A1B0GVY4 71 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 F6UB75 175 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 HBE1P02100 147 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 CD3DP04234 171 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 ELK1P19419 428 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 PSMB3P49720 205 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 RORCP51449 518 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 RNASE12Q5GAN4 147 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 RNASE10Q5GAN6 216 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 C6orf223Q8N319 242 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 ARRDC1Q8N5I2 433 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 ZNRF2Q8NHG8 242 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 RNF125Q96EQ8 232 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 COPZ2Q9P299 210 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 GOLT1BQ9Y3E0 138 aa12.53□□□□□ -0.4
CLSTN3-214ENST00000542663 CDS2O95674 445 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 PAX9P55771 341 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 PSG9Q00887 426 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 RRN3P1Q2M238 152 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 FAM78BQ5VT40 261 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 ETFRF1Q6IPR1 90 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 FAM219AQ8IW50 185 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 OR4D10Q8NGI6 311 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 OR13C8Q8NGS7 320 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 GLYATL2Q8WU03 294 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 GPR146Q96CH1 333 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 YIPF6Q96EC8 236 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 TMEM222Q9H0R3 208 aa12.52□□□□□ -0.41
CLSTN3-214ENST00000542663 HPGDSO60760 199 aa12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 ID1P41134 155 aa12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 CCDC71LQ8N9Z2 235 aa12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 ZFAND1Q8TCF1 268 aa12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 C7orf50Q9BRJ6 194 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 CACNG5Q9UF02 275 aa12.51□□□□□ -0.41
CLSTN3-214ENST00000542663 A0A0J9YX75 114 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 CEBPZOSA8MTT3 80 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 B3GALNT1O75752 331 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 PRM2P04554 102 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 OR5AC1P0C628 307 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 MEF2DQ14814 521 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 SPATA31B1PQ5VZV4 182 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 SELENOHQ8IZQ5 122 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 TERB2Q8NHR7 220 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 COQ8AQ8NI60 647 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 MARCH1Q8TCQ1 289 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 ATG101Q9BSB4 218 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 PBDC1Q9BVG4 233 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 SCRT2Q9NQ03 307 aa12.5□□□□□ -0.41
CLSTN3-214ENST00000542663 A8MTW9 85 aa12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 NUP62P37198 522 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 NMSQ5H8A3 153 aa12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 OR8G2PQ6IF36 304 aa12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 AMTNQ6UX39 209 aa12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 OR52I2Q8NH67 350 aa12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 RBPMSQ93062 196 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-214ENST00000542663 IGKV1D-37A0A075B6S9 117 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 ALDH3B2P48448 385 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 SUPT4H1P63272 117 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 ZNF90Q03938 601 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 C20orf173Q96LM9 149 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 ABHD1Q96SE0 405 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 RTBDNQ9BSG5 229 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 MAGT1Q9H0U3 335 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 MTFP1Q9UDX5 166 aa12.48□□□□□ -0.41
CLSTN3-214ENST00000542663 TEX13DA0A0J9YY54 714 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 ISLRO14498 428 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 TBPP20226 339 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 SCGB2B2Q4G0G5 96 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 C1orf194Q5T5A4 169 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 EBLN2Q6P2I7 272 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 SPATA12Q7Z6I5 190 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 IGF2BP2-AS1Q96M15 143 aa12.47□□□□□ -0.41
CLSTN3-214ENST00000542663 NCS1P62166 190 aa12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 KLF9Q13886 244 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 TMEM268Q5VZI3 342 aa12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 C17orf77Q96MU5 243 aa12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 NAA60Q9H7X0 242 aa12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 LINC00588Q9Y4M8 146 aa12.46□□□□□ -0.41
CLSTN3-214ENST00000542663 PLAC8L1A1L4L8 177 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 LYRM9A8MSI8 78 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 ZNF705GA8MUZ8 300 aaPredicted RBP12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 CRXO43186 299 aaPredicted RBP12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 LYZP61626 148 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 GAMTQ14353 236 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 NOXA1Q86UR1 476 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 TMEM208Q9BTX3 173 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 RPRMQ9NS64 109 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 DOK5Q9P104 306 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 PFDN2Q9UHV9 154 aa12.45□□□□□ -0.42
CLSTN3-214ENST00000542663 ZFP92A6NM28 416 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 NUDT3O95989 172 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 DEFB130BP0DP73 79 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms