RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 Q6ZWC4 215 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 WFDC3Q8IUB2 231 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 THAP8Q8NA92 274 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 DCANP1Q8TF63 244 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 TBC1D24Q9ULP9 559 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 TP53TG1Q9Y2A0 90 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 WRBO00258 174 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 BUB3O43684 328 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 LYL1P12980 280 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 APOC4P55056 127 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 PAX9P55771 341 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 ZNF90Q03938 601 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 RNF125Q96EQ8 232 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 GRAMD2BQ96HH9 432 aa10.46□□□□□ -0.73
USP28-209ENST00000540925 PMS2P5A8MQ11 134 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 UBE2CO00762 179 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 IFNA21P01568 189 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 NKX2-1P43699 371 aaPredicted RBP10.45□□□□□ -0.74
USP28-209ENST00000540925 POLR2GP62487 172 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP28-209ENST00000540925 RPP30P78346 268 aaKnown RBP10.45□□□□□ -0.74
USP28-209ENST00000540925 STPG3Q8N7X2 389 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 OR51G1Q8NGK1 321 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 S100ZQ8WXG8 99 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 SLC35E1Q96K37 410 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 TRGV9Q99603 122 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 NUDT15Q9NV35 164 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 PTTG2Q9NZH5 202 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 ALMS1Q8TCU4 4167 aa10.45□□□□□ -0.74
USP28-209ENST00000540925 ASAH1Q13510 395 aa10.44□□□□□ -0.74
USP28-209ENST00000540925 SPANXN5Q5MJ07 72 aa10.44□□□□□ -0.74
USP28-209ENST00000540925 OR8G2PQ6IF36 304 aa10.44□□□□□ -0.74
USP28-209ENST00000540925 ZBTB8BQ8NAP8 495 aaPredicted RBP10.44□□□□□ -0.74
USP28-209ENST00000540925 RNF183Q96D59 192 aa10.44□□□□□ -0.74
USP28-209ENST00000540925 NARS2Q96I59 477 aaKnown RBP10.44□□□□□ -0.74
USP28-209ENST00000540925 SMIM8Q96KF7 97 aa10.44□□□□□ -0.74
USP28-209ENST00000540925 TRAV6A0A075B6T7 132 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 HELTA6NFD8 242 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 ZFP92A6NM28 416 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 H3BP45 60 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 DNASE2O00115 360 aaPredicted RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 RPL35AP18077 110 aaKnown RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 EIF2B2P49770 351 aaKnown RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 DEFB131AP59861 70 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 RPL11P62913 178 aaKnown RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 IAH1Q2TAA2 248 aaPredicted RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 TMEM14EPQ6UXP3 125 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 STXBP6Q8NFX7 210 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 RABAC1Q9UI14 185 aa10.43□□□□□ -0.74
USP28-209ENST00000540925 RCL1Q9Y2P8 373 aaKnown RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 STRAPQ9Y3F4 350 aaKnown RBP10.43□□□□□ -0.74
USP28-209ENST00000540925 HYDINQ4G0P3 5121 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 SPRY2O43597 315 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 SSSCA1O60232 199 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 AP2S1P53680 142 aaPredicted RBP10.42□□□□□ -0.74
USP28-209ENST00000540925 TAS2R30P59541 319 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 IFITM3Q01628 133 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 DEFB135Q30KP9 77 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 LEMD1Q68G75 181 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 ACOT7LQ6ZUV0 252 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 ZNF431Q8TF32 576 aaPredicted RBP10.42□□□□□ -0.74
USP28-209ENST00000540925 SEC22CQ9BRL7 303 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 CSTL1Q9H114 145 aa10.42□□□□□ -0.74
USP28-209ENST00000540925 SEPSECSQ9HD40 501 aaKnown RBP10.42□□□□□ -0.74
USP28-209ENST00000540925 UPK1BO75841 260 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 MBPP02686 304 aaPredicted RBP10.41□□□□□ -0.74
USP28-209ENST00000540925 FABP1P07148 127 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 GIG44P09565 113 aaPredicted RBP10.41□□□□□ -0.74
USP28-209ENST00000540925 H2AFB2P0C5Z0 115 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 SIGLEC15Q6ZMC9 328 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 TMEM182Q6ZP80 229 aaPredicted RBP10.41□□□□□ -0.74
USP28-209ENST00000540925 TMEM144Q7Z5S9 345 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 RAB40CQ96S21 281 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 WDR12Q9GZL7 423 aaKnown RBP10.41□□□□□ -0.74
USP28-209ENST00000540925 C11orf1Q9H5F2 150 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 PSENENQ9NZ42 101 aa10.41□□□□□ -0.74
USP28-209ENST00000540925 PAIP2BQ9ULR5 123 aaKnown RBP10.41□□□□□ -0.74
USP28-209ENST00000540925 FAM240BA0A1B0GVZ2 78 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 SNRPGP15A8MWD9 76 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 CCSO14618 274 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 TSC22D2O75157 780 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 CCNKO75909 580 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 ZNF688P0C7X2 276 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 NUP62P37198 522 aaPredicted RBP10.4□□□□□ -0.74
USP28-209ENST00000540925 IL15RAQ13261 267 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 OR2F1Q13607 317 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 C1orf194Q5T5A4 169 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 ZFAND6Q6FIF0 208 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 TRPT1Q86TN4 253 aaKnown RBP10.4□□□□□ -0.74
USP28-209ENST00000540925 NRN1Q9NPD7 142 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 SLC45A2Q9UMX9 530 aa10.4□□□□□ -0.74
USP28-209ENST00000540925 C7orf66A4D0T2 115 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 FNDC10F2Z333 226 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 SOCS3O14543 225 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 CFDP00746 253 aaPredicted RBP10.39□□□□□ -0.75
USP28-209ENST00000540925 IL5P05113 134 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 ATF4P18848 351 aaPredicted RBP10.39□□□□□ -0.75
USP28-209ENST00000540925 LYZP61626 148 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 DLK1P80370 383 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 EWSR1Q01844 656 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP28-209ENST00000540925 ZNF846Q147U1 533 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms