RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 ALKBH7Q9BT30 221 aaPredicted RBP11.57□□□□□ -0.56
COLCA1-204ENST00000540738 LHFPL1Q86WI0 220 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 OR10D4PQ8NGN7 298 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 A0A1W2PRE2 83 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 J3QR89 54 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 LHFPL4Q7Z7J7 247 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 VN1R17PQ8TDU5 208 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 ZNF506Q5JVG8 444 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 EIF3GO75821 320 aaKnown RBP eCLIP11.56□□□□□ -0.56
COLCA1-204ENST00000540738 PSG1P11464 419 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 SFRP2Q96HF1 295 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 C2orf16Q68DN1 1984 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 ZNF688P0C7X2 276 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 SYNJ2BPP57105 145 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 SUMO2P61956 95 aaKnown RBP11.56□□□□□ -0.56
COLCA1-204ENST00000540738 FBXL19-AS1Q494R0 122 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 MUC21Q5SSG8 566 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 RHPN1-AS1Q9BWJ2 59 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 ELANEP08246 267 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 PSMB2P49721 201 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 KLF17Q5JT82 389 aaPredicted RBP11.56□□□□□ -0.56
COLCA1-204ENST00000540738 CACNA1AO00555 2505 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 A0A1B0GUT8 65 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 FOXL1Q12952 345 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 RNF138Q8WVD3 245 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 C2orf88Q9BSF0 95 aa11.56□□□□□ -0.56
COLCA1-204ENST00000540738 ATP6V0E1O15342 81 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 DKK1O94907 266 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 NMBP08949 121 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 RPL35AP18077 110 aaKnown RBP11.55□□□□□ -0.56
COLCA1-204ENST00000540738 PRADC1Q9BSG0 188 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 RPP21Q9H633 154 aaKnown RBP11.55□□□□□ -0.56
COLCA1-204ENST00000540738 CRPP02741 224 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 TBX15Q96SF7 602 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 OVOL3O00110 214 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 HOXA3O43365 443 aaPredicted RBP11.55□□□□□ -0.56
COLCA1-204ENST00000540738 INSP01308 110 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 OR4D5Q8NGN0 318 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 VPREB3Q9UKI3 123 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 EPDR1Q9UM22 224 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 CACNG7P62955 275 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 HS3ST6Q96QI5 342 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 VGLL1Q99990 258 aa11.55□□□□□ -0.56
COLCA1-204ENST00000540738 M0R143 59 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 IGHV2-70P01814 119 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 AMBPP02760 352 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 ZNF503-AS2A6NEH8 195 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 LINC00473A8K010 186 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 DCAF16Q9NXF7 216 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 PSG8Q9UQ74 426 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 SCN8AQ9UQD0 1980 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 QRFPP83859 136 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 CD300CQ08708 224 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 IL17RELQ6ZVW7 336 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 OR10AG1Q8NH19 301 aa11.54□□□□□ -0.56
COLCA1-204ENST00000540738 GTF3C1Q12789 2109 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 RARRES2Q99969 163 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 GRIFINA4D1Z8 144 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 CXorf65A6NEN9 183 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 ACTL10Q5JWF8 245 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 C10orf105Q8TEF2 133 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 SDHCQ99643 169 aaPredicted RBP11.53□□□□□ -0.56
COLCA1-204ENST00000540738 TMEM70Q9BUB7 260 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 MPTX1A8MV57 137 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 MEIG1Q5JSS6 88 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 DOCK9Q9BZ29 2069 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 NDUFS7O75251 213 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 TOMM40O96008 361 aa11.53□□□□□ -0.56
COLCA1-204ENST00000540738 SLC25A39Q9BZJ4 359 aaPredicted RBP11.53□□□□□ -0.56
COLCA1-204ENST00000540738 KIF26AQ9ULI4 1882 aaPredicted RBP11.53□□□□□ -0.56
COLCA1-204ENST00000540738 IGHV4-39P01824 125 aa11.52□□□□□ -0.56
COLCA1-204ENST00000540738 FHITP49789 147 aa11.52□□□□□ -0.56
COLCA1-204ENST00000540738 RPL15P61313 204 aaKnown RBP11.52□□□□□ -0.56
COLCA1-204ENST00000540738 ZNF415Q09FC8 603 aa11.52□□□□□ -0.56
COLCA1-204ENST00000540738 LINC00477Q96M19 166 aa11.52□□□□□ -0.56
COLCA1-204ENST00000540738 MRPL18Q9H0U6 180 aaKnown RBP11.52□□□□□ -0.56
COLCA1-204ENST00000540738 OTOGLQ3ZCN5 2332 aa11.52□□□□□ -0.56
COLCA1-204ENST00000540738 PHF3Q92576 2039 aaKnown RBP11.52□□□□□ -0.56
COLCA1-204ENST00000540738 LGALS3P17931 250 aaKnown RBP11.52□□□□□ -0.56
COLCA1-204ENST00000540738 NTF4P34130 210 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 FBLN7Q53RD9 439 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 TREML4Q6UXN2 200 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 ZNF833PQ6ZTB9 187 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 IGHV4-30-2A0A087WSY4 118 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 IGHV4-61A0A0C4DH41 118 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 ZNF98A6NK75 572 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 OR9G4Q8NGQ1 327 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 NMSQ5H8A3 153 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 KLK15Q9H2R5 256 aa11.52□□□□□ -0.57
COLCA1-204ENST00000540738 SCO2A0A1W2PP80 73 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 PYYP10082 97 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 SUPT4H1P63272 117 aaKnown RBP11.51□□□□□ -0.57
COLCA1-204ENST00000540738 VAMP3Q15836 100 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 CBLN2Q8IUK8 224 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 Q8NA96 180 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 H3BRM9 83 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 LEPROTL1O95214 131 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 TRAV3A0A0B4J244 114 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 IGKV1-5P01602 117 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 SNRPEP62304 92 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms