RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 TMEM116Q8NCL8 245 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 OR10G4Q8NGN3 311 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 OR10G9Q8NGN4 311 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 OR10G7Q8NGN6 311 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 SLC25A22Q9H936 323 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 COL6A5A8TX70 2615 aa13.33□□□□□ -0.27
CLN6-202ENST00000538696 FAM223BA6NKX1 122 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 ZFP92A6NM28 416 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 ADARB2-AS1A8MUL3 147 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 H2AFB1P0C5Y9 115 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 ZNF90Q03938 601 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 IL34Q6ZMJ4 242 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 FAM223AQ8IWN6 122 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 OR4X1Q8NH49 305 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 MARC2Q969Z3 335 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 TRGV9Q99603 122 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 GNB4Q9HAV0 340 aa13.33□□□□□ -0.28
CLN6-202ENST00000538696 TENM1Q9UKZ4 2725 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 IGHV3-11P01762 117 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 CCL20P78556 96 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 LCN15Q6UWW0 184 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 C3orf56Q8N813 242 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 SFT2D1Q8WV19 159 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 MBD3L1Q8WWY6 194 aa13.32□□□□□ -0.28
CLN6-202ENST00000538696 ACTR3CQ9C0K3 210 aaPredicted RBP13.32□□□□□ -0.28
CLN6-202ENST00000538696 TSSC4Q9Y5U2 329 aaPredicted RBP13.32□□□□□ -0.28
CLN6-202ENST00000538696 CTXND1A0A1B0GTU2 59 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 A0A1W2PRX2 142 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 MAP1LC3B2A6NCE7 125 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 SEC14L6B5MCN3 397 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 CLN5O75503 358 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 IGLC1P0CG04 106 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 CDC34P49427 236 aaPredicted RBP13.31□□□□□ -0.28
CLN6-202ENST00000538696 FGF8P55075 233 aaPredicted RBP13.31□□□□□ -0.28
CLN6-202ENST00000538696 C15orf32Q32M92 178 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 TIGITQ495A1 244 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 USMG5Q96IX5 58 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 UBE2E2Q96LR5 201 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 MAP1LC3BQ9GZQ8 125 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 THYN1Q9P016 225 aa13.31□□□□□ -0.28
CLN6-202ENST00000538696 TRAV1-1A0A0B4J248 108 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 A0A0G2JLM5 398 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 NUDT19A8MXV4 375 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 F8W735 103 aaPredicted RBP13.3□□□□□ -0.28
CLN6-202ENST00000538696 HMGB3O15347 200 aaKnown RBP13.3□□□□□ -0.28
CLN6-202ENST00000538696 IGHV3-23P01764 117 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 HBE1P02100 147 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 CDX1P47902 265 aaPredicted RBP13.3□□□□□ -0.28
CLN6-202ENST00000538696 ATP5G2Q06055 141 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 SPATA31B1PQ5VZV4 182 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 NDUFA11Q86Y39 141 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 KLHL30-AS1Q8NEE0 82 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 RAB24Q969Q5 203 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 OR5B12Q96R08 314 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 C21orf62Q9NYP8 219 aa13.3□□□□□ -0.28
CLN6-202ENST00000538696 RAB19A4D1S5 217 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 IGKV1-17P01599 117 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 LGALS1P09382 135 aaKnown RBP13.29□□□□□ -0.28
CLN6-202ENST00000538696 MFAP4P55083 255 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 SELENOTP62341 195 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 SRSF3P84103 164 aaKnown RBP13.29□□□□□ -0.28
CLN6-202ENST00000538696 NSUN5P1Q3KNT7 163 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 SHISA2Q6UWI4 295 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 VN1R17PQ8TDU5 208 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 C4orf3Q8WVX3 66 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 CCDC140Q96MF4 163 aa13.29□□□□□ -0.28
CLN6-202ENST00000538696 STAB1Q9NY15 2570 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 Q56UQ5 140 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 ZNF343Q6P1L6 599 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 C8orf86Q6ZUL3 223 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 EIF4E3Q8N5X7 224 aaKnown RBP13.28□□□□□ -0.28
CLN6-202ENST00000538696 ZNF502Q8TBZ5 544 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 EEF1AKMT3Q96AZ1 226 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 DOK5Q9P104 306 aa13.28□□□□□ -0.28
CLN6-202ENST00000538696 I3L521 148 aa13.27□□□□□ -0.29
CLN6-202ENST00000538696 NPBWR1P48145 328 aa13.27□□□□□ -0.29
CLN6-202ENST00000538696 SCRT1Q9BWW7 348 aa13.27□□□□□ -0.29
CLN6-202ENST00000538696 TMEM231Q9H6L2 316 aa13.27□□□□□ -0.29
CLN6-202ENST00000538696 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.26□□□□□ -0.29
CLN6-202ENST00000538696 A0A1W2PPV4 95 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 GNG7O60262 68 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 TRBV12-3P01733 135 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 OR5G3P0C626 314 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 RHOBP62745 196 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 DEFB136Q30KP8 78 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 TOR2AQ5JU69 321 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 MIR17HGQ75NE6 70 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 TMEM37Q8WXS4 190 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 FAM210AQ96ND0 272 aa13.26□□□□□ -0.29
CLN6-202ENST00000538696 SEPSECSQ9HD40 501 aaKnown RBP13.26□□□□□ -0.29
CLN6-202ENST00000538696 TRBV7-1A0A0A6YYK4 115 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 ANKRD34BA5PLL1 514 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 COX7A2P2O60397 106 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 PSG1P11464 419 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 FCGR2BP31994 310 aaPredicted RBP13.25□□□□□ -0.29
CLN6-202ENST00000538696 GUK1Q16774 197 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 FAM78BQ5VT40 261 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 PATE2Q6UY27 113 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 TXN2Q99757 166 aa13.25□□□□□ -0.29
CLN6-202ENST00000538696 TMPRSS5Q9H3S3 457 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms