RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ZNF688P0C7X2 276 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 IGLC6P0CF74 106 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CPMP14384 443 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CBLN1P23435 193 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 PEBP1P30086 187 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 SGSHP51688 502 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 HSPE1P61604 102 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 RPL31P62899 125 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 MRPS6P82932 125 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 MZT1Q08AG7 82 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 ZNF415Q09FC8 603 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 DIAPH2-AS1Q14236 149 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 HES1Q14469 280 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CLEC12BQ2HXU8 276 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 TBC1D28Q2M2D7 210 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CEACAM16Q2WEN9 425 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 NMSQ5H8A3 153 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 DMRTC1Q5HYR2 192 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 FAM78AQ5JUQ0 283 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 IBA57Q5T440 356 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 HIST2H2BDQ6DRA6 164 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 LCN12Q6JVE5 192 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 LCN10Q6JVE6 187 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 MORN3Q6PF18 240 aaPredicted RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 DUX4L9Q6RFH8 374 aaPredicted RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 CBLN3Q6UW01 205 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 FAM159AQ6UWV7 190 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 PP632Q6XCG6 107 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 C2orf91Q6ZV80 131 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 TCF23Q7RTU1 214 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 TMEM252Q8N6L7 170 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 KIR3DL3Q8N743 410 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 ZNF645Q8N7E2 425 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 TMEM116Q8NCL8 245 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 OR4C13Q8NGP0 309 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 OR1L4Q8NGR5 311 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 OR1F12Q8NHA8 337 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 SLC37A2Q8TED4 501 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 ZNF721Q8TF20 911 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 SSC4DQ8WTU2 575 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 PIGCQ92535 297 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 RASL10AQ92737 203 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 RDH5Q92781 318 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CLDN23Q96B33 292 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CHCHD1Q96BP2 118 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 C8orf44Q96CB5 159 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 SLC25A44Q96H78 314 aaPredicted RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 PRELID3AQ96N28 172 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 LINC01587Q99440 93 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 MCHR1Q99705 422 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 C20orf78Q9BR46 151 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 PRORYQ9H606 182 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 WSB2Q9NYS7 404 aaPredicted RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 HIGD1BQ9P298 99 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 PRNDQ9UKY0 176 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 CELA1Q9UNI1 258 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 RCL1Q9Y2P8 373 aaKnown RBP1.96□□□□□ -2.1
SKA3-207ENST00000536239 TIMM9Q9Y5J7 89 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 HCFC1P51610 2035 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 KIAA1549Q9HCM3 1950 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 KIAA2026Q5HYC2 2103 aa1.96□□□□□ -2.1
SKA3-207ENST00000536239 NCOA6Q14686 2063 aaPredicted RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 DOCK11Q5JSL3 2073 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 ADAMTSL1Q8N6G6 1762 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 PAPPA2Q9BXP8 1791 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 DOCK3Q8IZD9 2030 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 TRAV5A0A0B4J249 113 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 CTXND1A0A1B0GTU2 59 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 TEX50A0A1B0GTY4 177 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 A0A1B0GWB2 263 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 MED19A0JLT2 244 aaPredicted RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 ZNF840PA6NDX5 716 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 FRG2CA6NGY1 282 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 A8MZ25 164 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 F2Z2F3 143 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 K7EN84 100 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 M0R2P5 195 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 CCL22O00626 93 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 UQCRQO14949 82 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 NKX2-2O95096 273 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 DUSP14O95147 198 aaKnown RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 NDUFA7O95182 113 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 EPPINO95925 133 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 NAPSAO96009 420 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 ATP5G1P05496 136 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 KLK1P06870 262 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 CA3P07451 260 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 LIFP15018 202 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 IL9P15248 144 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 IGFBP3P17936 291 aaPredicted RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 CNTFRP26992 372 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 MPV17P39210 176 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 NKX2-1P43699 371 aaPredicted RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 IER3P46695 156 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 ATP5G3P48201 142 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 CAMPP49913 170 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 DYNLT3P51808 116 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 TAS2R45P59539 299 aa1.95□□□□□ -2.1
SKA3-207ENST00000536239 RPS15AP62244 130 aaKnown RBP1.95□□□□□ -2.1
SKA3-207ENST00000536239 GNG5P63218 68 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms