RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PSG9Q00887 426 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 PSG7Q13046 419 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 EIF4EBP1Q13541 118 aaPredicted RBP5.34□□□□□ -1.55
USP28-202ENST00000535607 TBC1D28Q2M2D7 210 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 KIAA1644Q3SXP7 199 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 KIAA2026Q5HYC2 2103 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 SAMD13Q5VXD3 122 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 DOLPP1Q86YN1 238 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 ATOH7Q8N100 152 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 TMEM251Q8N6I4 163 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 FER1L6-AS1Q8NA97 138 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 OR4X2Q8NGF9 303 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 OR9G4Q8NGQ1 327 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 OR10D3Q8NH80 312 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 OR2T6Q8NHC8 308 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 RPL36ALQ969Q0 106 aaKnown RBP5.34□□□□□ -1.55
USP28-202ENST00000535607 POM121L2Q96KW2 1035 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 RCHY1Q96PM5 261 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 S1PR3Q99500 378 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 GFRA4Q9GZZ7 299 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 SH3BGRL2Q9UJC5 107 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 BOKQ9UMX3 212 aaPredicted RBP5.34□□□□□ -1.55
USP28-202ENST00000535607 LSM4Q9Y4Z0 139 aaKnown RBP5.34□□□□□ -1.55
USP28-202ENST00000535607 PPIAL4AQ9Y536 164 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 DOCK11Q5JSL3 2073 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 CEP295Q9C0D2 2601 aa5.34□□□□□ -1.55
USP28-202ENST00000535607 SHANK1Q9Y566 2161 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 A0A1W2PR80 420 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 C2orf70A6NJV1 201 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 CHEK1O14757 476 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 SIVA1O15304 175 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 ZNF207O43670 478 aaKnown RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 SLC25A17O43808 307 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 SPINK4O60575 86 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 CGAP01215 116 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 PATE4P0C8F1 98 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 COX8AP10176 69 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 DUTP33316 252 aaKnown RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 VDAC2P45880 294 aaPredicted RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 TCL1AP56279 114 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 RBPJQ06330 500 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 TMEM97Q5BJF2 176 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 C10orf25Q5T742 122 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 Q8N7P7 452 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 NDFIP1Q9BT67 221 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 PRRG4Q9BZD6 226 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 RNASE7Q9H1E1 156 aaKnown RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 SCRT2Q9NQ03 307 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 JPT1Q9UK76 154 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 PRNDQ9UKY0 176 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 AMMECR1Q9Y4X0 333 aaPredicted RBP5.33□□□□□ -1.56
USP28-202ENST00000535607 AKAP13Q12802 2813 aa5.33□□□□□ -1.56
USP28-202ENST00000535607 FRYQ5TBA9 3013 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 MUC21A0A0G2JKD1 596 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 MUC21A0A140T8X8 626 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 OR2T8A6NH00 312 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 C12orf77C9JDV5 145 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 K7EP34 96 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 CEACAM4O75871 244 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 OR9G9P0C7N8 305 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 CCL3P10147 92 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 FABP2P12104 132 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 ARL3P36405 182 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 B3GALT5-AS1P59052 145 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 PLP1P60201 277 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 ERVK11-1P61568 191 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 HSPE1P61604 102 aaKnown RBP5.32□□□□□ -1.56
USP28-202ENST00000535607 RPL30P62888 115 aaKnown RBP5.32□□□□□ -1.56
USP28-202ENST00000535607 HSD52Q0P140 79 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 FXYD3Q14802 87 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 TMEM30BQ3MIR4 351 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 GCSAMLQ5JQS6 135 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 PIK3CD-AS1Q5SR53 167 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 MUC21Q5SSG8 566 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 SERTAD4-AS1Q5TG53 156 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 LCN12Q6JVE5 192 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 EBLN2Q6P2I7 272 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 CLEC2AQ6UVW9 174 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 SPATA12Q7Z6I5 190 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 OR10AG1Q8NH19 301 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 VSTM2AQ8TAG5 236 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 ABHD3Q8WU67 409 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 SSMEM1Q8WWF3 244 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 TMEM186Q96B77 213 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 RNF183Q96D59 192 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 C5orf30Q96GV9 206 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 IGF2BP2-AS1Q96M15 143 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 NABP2Q9BQ15 211 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 MSRB1Q9NZV6 116 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 TCF19Q9Y242 345 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 FOXA2Q9Y261 457 aaPredicted RBP5.32□□□□□ -1.56
USP28-202ENST00000535607 ZNF257Q9Y2Q1 563 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 SPTBN4Q9H254 2564 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 PCSK5Q92824 1860 aa5.32□□□□□ -1.56
USP28-202ENST00000535607 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.31□□□□□ -1.56
USP28-202ENST00000535607 GAGE12JA6NER3 117 aa5.31□□□□□ -1.56
USP28-202ENST00000535607 C15orf61A6NNL5 157 aa5.31□□□□□ -1.56
USP28-202ENST00000535607 C17orf100A8MU93 164 aa5.31□□□□□ -1.56
USP28-202ENST00000535607 PRSS46E5RG02 174 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms