RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TEX47	Q8TBZ9	253 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	GNPDA2	Q8TDQ7	276 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	ITFG2	Q969R8	447 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	TSPAN32	Q96QS1	320 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	HIST1H2BL	Q99880	126 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	RASL12	Q9NYN1	266 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	FBXO5	Q9UKT4	447 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	EPDR1	Q9UM22	224 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	SLC22A13	Q9Y226	551 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	PRELID3B	Q9Y3B1	194 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	BOD1L1	Q8NFC6	3051 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	TLN1	Q9Y490	2541 aa	Known RBP	0.9	□□□□□ -2.27
CD44-238	ENST00000534296	AHNAK	Q09666	5890 aa	Known RBP	0.9	□□□□□ -2.27
CD44-238	ENST00000534296	FBN2	P35556	2912 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	UBR2	Q8IWV8	1755 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	RYR2	Q92736	4967 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	COL6A6	A6NMZ7	2263 aa		0.9	□□□□□ -2.27
CD44-238	ENST00000534296	TPR	P12270	2363 aa	Known RBP	0.9	□□□□□ -2.27
CD44-238	ENST00000534296	ECM29	Q5VYK3	1845 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	MKI67	P46013	3256 aa	Known RBP	0.89	□□□□□ -2.27
CD44-238	ENST00000534296	SBF1	O95248	1867 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	GLI3	P10071	1580 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	MED14	O60244	1454 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	RTL1	A6NKG5	1358 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296		A0A087X0T9	212 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	CNIH1	O95406	144 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	CRYGA	P11844	174 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	ERP29	P30040	261 aa	Known RBP	0.89	□□□□□ -2.27
CD44-238	ENST00000534296	RHOG	P84095	191 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	KISS1	Q15726	138 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	DEFB115	Q30KQ5	88 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	LIN52	Q52LA3	116 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	0.89	□□□□□ -2.27
CD44-238	ENST00000534296		Q6ZQT0	140 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	C9orf163	Q8N9P6	203 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	OR51A2	Q8NGJ7	313 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	OR8D4	Q8NGM9	314 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	OR2T10	Q8NGZ9	312 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	SFT2D1	Q8WV19	159 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	PHB2	Q99623	299 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	SIGMAR1	Q99720	223 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	UQCC1	Q9NVA1	299 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	UTP11	Q9Y3A2	253 aa	Known RBP	0.89	□□□□□ -2.27
CD44-238	ENST00000534296	FAM32A	Q9Y421	112 aa	Known RBP	0.89	□□□□□ -2.27
CD44-238	ENST00000534296	MYH2	Q9UKX2	1941 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	ITPR1	Q14643	2758 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	LRP5	O75197	1615 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	BIRC6	Q9NR09	4857 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	ARHGEF11	O15085	1522 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	HMGXB3	Q12766	1538 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	PIK3C2G	O75747	1445 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	NCOA1	Q15788	1441 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	ARFGEF3	Q5TH69	2177 aa		0.89	□□□□□ -2.27
CD44-238	ENST00000534296	UNC80	Q8N2C7	3258 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	BICRA	Q9NZM4	1560 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	MYH3	P11055	1940 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	ROBO3	Q96MS0	1386 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	CNOT1	A5YKK6	2376 aa	Known RBP	0.88	□□□□□ -2.27
CD44-238	ENST00000534296	IGKV1D-42	A0A075B6H8	117 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	0.88	□□□□□ -2.27
CD44-238	ENST00000534296		A0A087WUJ7	227 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	TRBV6-7	A0A0A0MS04	114 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	TRAV1-1	A0A0B4J248	108 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	IGKV1-9	A0A0C4DH69	117 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	FAM236D	A0A1B0GTK5	79 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	C19orf84	I3L1E1	186 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	OR1I1	O60431	355 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	OR4E1	P0C645	316 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	FAM236C	P0DP71	79 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	CDC42	P60953	191 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	CCL7	P80098	99 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	RNASE10	Q5GAN6	216 aa	Known RBP	0.88	□□□□□ -2.27
CD44-238	ENST00000534296	BCL2L15	Q5TBC7	163 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296		Q8N2B8	174 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	OR13D1	Q8NGV5	346 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	SLC25A40	Q8TBP6	338 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	ODF3	Q96PU9	254 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	C14orf105	Q9NVL8	296 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	TP73-AS1	Q9UF72	201 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	MYOF	Q9NZM1	2061 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	TEX15	Q9BXT5	2789 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	CCDC144A	A2RUR9	1427 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	ADGRL3	Q9HAR2	1447 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	DIDO1	Q9BTC0	2240 aa	Known RBP	0.88	□□□□□ -2.27
CD44-238	ENST00000534296	ZAN	Q9Y493	2812 aa		0.88	□□□□□ -2.27
CD44-238	ENST00000534296	EML6	Q6ZMW3	1958 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	PLXNA4	Q9HCM2	1894 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	SMIM9	A6NGZ8	99 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	OR7C1	O76099	320 aa	Predicted RBP	0.87	□□□□□ -2.27
CD44-238	ENST00000534296	HAND1	O96004	215 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	SERPINA1	P01009	418 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	CLPS	P04118	112 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	CTSD	P07339	412 aa	Predicted RBP	0.87	□□□□□ -2.27
CD44-238	ENST00000534296	CYBA	P13498	195 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	ZNF93	P35789	620 aa	Predicted RBP	0.87	□□□□□ -2.27
CD44-238	ENST00000534296	MYL5	Q02045	173 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	FADD	Q13158	208 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	BRMS1L	Q5PSV4	323 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296		Q6Q795	121 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	IFT20	Q8IY31	132 aa		0.87	□□□□□ -2.27

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