RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 TRAV18A0A075B6X5 111 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 A0A1B0GWB2 263 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 C15orf61A6NNL5 157 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 H0YIG0 161 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 CD55P08174 381 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 LEPP41159 167 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 RPS15AP62244 130 aaKnown RBP4.43□□□□□ -1.7
CD44-231ENST00000531110 HERVK_113P63121 156 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 TAF10Q12962 218 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 UNC119Q13432 240 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 WFDC2Q14508 124 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 INSL4Q14641 139 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 ZNF141Q15928 474 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 Q56UQ5 140 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 LINC01545Q5VT33 79 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 Q5XG85 94 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 ACP7Q6ZNF0 438 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 OR10AC1Q8NH08 325 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 PHLDA1Q8WV24 401 aaPredicted RBP4.43□□□□□ -1.7
CD44-231ENST00000531110 H1FXQ92522 213 aaKnown RBP4.43□□□□□ -1.7
CD44-231ENST00000531110 SPATA33Q96N06 139 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 VSIRQ9H7M9 311 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 JPT2Q9H910 190 aa4.43□□□□□ -1.7
CD44-231ENST00000531110 TECRQ9NZ01 308 aaKnown RBP4.43□□□□□ -1.7
CD44-231ENST00000531110 C9JCJ5 164 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 PIN1P1O15428 100 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 HCRTO43612 131 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 CPSF4O95639 269 aaKnown RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 PRSS1P07477 247 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 CT62P0C5K7 136 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 FGF6P10767 208 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 GATA2P23769 480 aaPredicted RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 PGFP49763 221 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 LIM2P55344 173 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 TAS2R45P59539 299 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 SUPT4H1P63272 117 aaKnown RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 HSPB3Q12988 150 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 EIF3IQ13347 325 aaKnown RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 FAM27D1Q5T7N8 215 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 NOXRED1Q6NXP6 359 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 TMEM14EPQ6UXP3 125 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 FAM231DQ6ZW35 169 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 TRPT1Q86TN4 253 aaKnown RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 ZNF329Q86UD4 541 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 FGFRL1Q8N441 504 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 FGF13Q92913 245 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 ZNF689Q96CS4 500 aaPredicted RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 DPH3Q96FX2 82 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 APOOQ9BUR5 198 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 FBXL15Q9H469 300 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 ARL2-SNX15V9GYD0 113 aa4.42□□□□□ -1.7
CD44-231ENST00000531110 TCF20Q9UGU0 1960 aaKnown RBP4.42□□□□□ -1.7
CD44-231ENST00000531110 PAPPA2Q9BXP8 1791 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 A0A0U1RQV1 116 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 SMIM28A0A1B0GU29 152 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 MDFIC2A0A1B0GVS7 189 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 RIIAD1A6NNX1 92 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 LY6LH3BQJ8 138 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 CPMP14384 443 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 GATA1P15976 413 aaPredicted RBP4.41□□□□□ -1.7
CD44-231ENST00000531110 NBL1P41271 181 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 CXCL5P42830 114 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 DMRTC1Q5HYR2 192 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 C1orf100Q5SVJ3 147 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 MRPL2Q5T653 305 aaKnown RBP4.41□□□□□ -1.7
CD44-231ENST00000531110 C9orf153Q5TBE3 101 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 MFSD12Q6NUT3 480 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 RPS27LQ71UM5 84 aaKnown RBP4.41□□□□□ -1.7
CD44-231ENST00000531110 LMX1AQ8TE12 382 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 BADQ92934 168 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 TMEM230Q96A57 120 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 FAM3DQ96BQ1 224 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 MRPL20Q9BYC9 149 aaKnown RBP4.41□□□□□ -1.7
CD44-231ENST00000531110 C21orf62Q9NYP8 219 aa4.41□□□□□ -1.7
CD44-231ENST00000531110 PRR32B1ATL7 298 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 IGLL5B9A064 214 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 ZFAND5O76080 213 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 NUDT14O95848 222 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 FGF1P05230 155 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 ACYP1P07311 99 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 VPREB1P12018 145 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 COX7CP15954 63 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 IGFBP3P17936 291 aaPredicted RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 RPL35AP18077 110 aaKnown RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 MDKP21741 143 aaPredicted RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 RPL13AP40429 203 aaKnown RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 SSR4P51571 173 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 DLX1P56177 255 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 GUSBP1Q15486 140 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 EBLN2Q6P2I7 272 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 Q6ZSR3 168 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 SLC25A48Q6ZT89 311 aaKnown RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 PRSS41Q7RTY9 318 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 HSD11B1LQ7Z5J1 315 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 RPS19BP1Q86WX3 136 aaKnown RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 MEX3DQ86XN8 651 aaKnown RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 TDHQ8IZJ6 230 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 C10orf126Q8N4M7 172 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 NPWQ8N729 165 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 DLX4Q92988 240 aaPredicted RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms