RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GDF5OSQ5U4N7 250 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 RASL11AQ6T310 242 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 ZNF841Q6ZN19 808 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 C18orf32Q8TCD1 76 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 TSKUQ8WUA8 353 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 C20orf202A1L168 122 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 HNRNPA3P51991 378 aaKnown RBP15.46■□□□□ 0.07
VPS28-213ENST00000530983 MFAP2P55001 183 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 RNASE8Q8TDE3 154 aaKnown RBP15.46■□□□□ 0.07
VPS28-213ENST00000530983 GRAMD2BQ96HH9 432 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 SSUH2Q9Y2M2 353 aa15.46■□□□□ 0.07
VPS28-213ENST00000530983 IGLC7A0M8Q6 106 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 C3orf79P0CE67 100 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 PRR27Q6MZM9 219 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 FAM19A2Q8N3H0 131 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 WNT10AQ9GZT5 417 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 CRYGCP07315 174 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 ORM2P19652 201 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 TMEM155Q4W5P6 130 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 HCP5Q6MZN7 132 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 SPACA3Q8IXA5 215 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 TNFRSF19Q9NS68 423 aa15.45■□□□□ 0.06
VPS28-213ENST00000530983 IGHV3-72A0A0B4J1Y9 119 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 MC5RP33032 325 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 PRRX1P54821 245 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 LHFPL4Q7Z7J7 247 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 ORAOV1Q8WV07 137 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 CORTO00230 105 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 KLK10O43240 276 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 IGHV1-8P0DP01 117 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 RBX1P62877 108 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 PVRIGQ6DKI7 326 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 C19orf35Q6ZS72 473 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 Q6ZVH6 145 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 OR1B1Q8NGR6 318 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 MRPL27Q9P0M9 148 aaKnown RBP15.44■□□□□ 0.06
VPS28-213ENST00000530983 EPDR1Q9UM22 224 aa15.44■□□□□ 0.06
VPS28-213ENST00000530983 PRRG2O14669 202 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 PTTG1IPP53801 180 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 ASCL5Q7RTU5 278 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 BLNKQ8WV28 456 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 RNASE6Q93091 150 aaKnown RBP15.43■□□□□ 0.06
VPS28-213ENST00000530983 PERPQ96FX8 193 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 SGK494Q96LW2 274 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 VWC2LB2RUY7 222 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 ENSAO43768 121 aaKnown RBP15.43■□□□□ 0.06
VPS28-213ENST00000530983 LGALS7P47929 136 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 MAJINQ3KP22 176 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 KAAG1Q9UBP8 84 aa15.43■□□□□ 0.06
VPS28-213ENST00000530983 HIGD1CA8MV81 97 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 SLC25A5P05141 298 aaKnown RBP15.42■□□□□ 0.06
VPS28-213ENST00000530983 HIST1H1EP10412 219 aaKnown RBP15.42■□□□□ 0.06
VPS28-213ENST00000530983 UBE2G1P62253 170 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 ETFRF1Q6IPR1 90 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 ATOH7Q8N100 152 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 STXBP6Q8NFX7 210 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 JKAMPQ9P055 326 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 SH3BGRL2Q9UJC5 107 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 KLF12Q9Y4X4 402 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 NTF3P20783 257 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 TRGV9Q99603 122 aa15.42■□□□□ 0.06
VPS28-213ENST00000530983 PGPA6NDG6 321 aa15.41■□□□□ 0.06
VPS28-213ENST00000530983 APELAP0DMC3 54 aa15.41■□□□□ 0.06
VPS28-213ENST00000530983 CNTFRP26992 372 aa15.41■□□□□ 0.06
VPS28-213ENST00000530983 HINT1P49773 126 aaPredicted RBP15.41■□□□□ 0.06
VPS28-213ENST00000530983 CHRDL1Q9BU40 450 aa15.41■□□□□ 0.06
VPS28-213ENST00000530983 SSBP4Q9BWG4 385 aaPredicted RBP15.41■□□□□ 0.06
VPS28-213ENST00000530983 TMEM133Q9H2Q1 129 aa15.41■□□□□ 0.06
VPS28-213ENST00000530983 TSPOP30536 169 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 TCF15Q12870 199 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 LEMD1Q68G75 181 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 UNQ5815/PRO19632Q6UWF5 114 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 TEX45Q8NA69 505 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 TMEM116Q8NCL8 245 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 MLST8Q9BVC4 326 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 MALRD1Q5VYJ5 2156 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 NBEAP1P0C6P0 100 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 DLX1P56177 255 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 TNXAQ16473 311 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 LCN12Q6JVE5 192 aa15.4■□□□□ 0.06
VPS28-213ENST00000530983 IGHV3-21A0A0B4J1V1 117 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 OR2J3O76001 311 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 GP9P14770 177 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 GPR6P46095 362 aaPredicted RBP15.39■□□□□ 0.05
VPS28-213ENST00000530983 RPL27AP46776 148 aaKnown RBP15.39■□□□□ 0.05
VPS28-213ENST00000530983 KLF5Q13887 457 aaPredicted RBP15.39■□□□□ 0.05
VPS28-213ENST00000530983 LINC00322Q6ZN03 302 aaPredicted RBP15.39■□□□□ 0.05
VPS28-213ENST00000530983 KLHDC1Q8N7A1 406 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 SMIM12Q96EX1 92 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 GPR82Q96P67 336 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 ALKBH7Q9BT30 221 aaPredicted RBP15.39■□□□□ 0.05
VPS28-213ENST00000530983 RPH3ALQ9UNE2 315 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 A0A1B0GXF2 115 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 CRYGBP07316 175 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 CAMPP49913 170 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 PRSS33Q8NF86 280 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 BORCS7Q96B45 105 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 CLEC7AQ9BXN2 247 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 DYNLRB1Q9NP97 96 aa15.39■□□□□ 0.05
VPS28-213ENST00000530983 ZZEF1O43149 2961 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms