RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 BMPR1BO00238 502 aa16.96■□□□□ 0.31
VPS28-205ENST00000526204 ZNF253O75346 499 aa16.96■□□□□ 0.31
VPS28-205ENST00000526204 TPTE2P1Q5T6R2 138 aa16.96■□□□□ 0.31
VPS28-205ENST00000526204 ZNF600Q6ZNG1 722 aa16.96■□□□□ 0.31
VPS28-205ENST00000526204 BLNKQ8WV28 456 aa16.96■□□□□ 0.31
VPS28-205ENST00000526204 SRSF8Q9BRL6 282 aaKnown RBP16.96■□□□□ 0.31
VPS28-205ENST00000526204 SSBP3Q9BWW4 388 aaPredicted RBP16.96■□□□□ 0.31
VPS28-205ENST00000526204 A0A1B0GV90 55 aa16.96■□□□□ 0.3
VPS28-205ENST00000526204 FAM87AP0C7U9 286 aa16.96■□□□□ 0.3
VPS28-205ENST00000526204 KIAA1644Q3SXP7 199 aa16.96■□□□□ 0.3
VPS28-205ENST00000526204 GPR82Q96P67 336 aa16.96■□□□□ 0.3
VPS28-205ENST00000526204 ZNF586Q9NXT0 402 aa16.96■□□□□ 0.3
VPS28-205ENST00000526204 SRIP30626 198 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 CA7P43166 264 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 DLX1P56177 255 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 GNG5P63218 68 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 C5orf17Q8NAS9 161 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 TSKUQ8WUA8 353 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 KCNS1Q96KK3 526 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 ATG101Q9BSB4 218 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 SCNM1Q9BWG6 230 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 C7orf69Q9H7B7 122 aa16.95■□□□□ 0.3
VPS28-205ENST00000526204 PKDREJQ9NTG1 2253 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 SNRPCP09234 159 aaKnown RBP16.94■□□□□ 0.3
VPS28-205ENST00000526204 APELAP0DMC3 54 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 GP9P14770 177 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 COX7A1P24310 79 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 OR8B3Q8NGG8 313 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 OR8B2Q96RD0 313 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 ARFGEF3Q5TH69 2177 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 LY6LH3BQJ8 138 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 CD33P20138 364 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 ZNF672Q499Z4 452 aaPredicted RBP16.94■□□□□ 0.3
VPS28-205ENST00000526204 NUP35Q8NFH5 326 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 SRSF12Q8WXF0 261 aaKnown RBP16.94■□□□□ 0.3
VPS28-205ENST00000526204 FMC1Q96HJ9 113 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 FBXL15Q9H469 300 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 HIGD1AQ9Y241 93 aa16.94■□□□□ 0.3
VPS28-205ENST00000526204 SSTP61278 116 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 PRR27Q6MZM9 219 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 C19orf35Q6ZS72 473 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 TMEM68Q96MH6 324 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 NAV3Q8IVL0 2385 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 PCNX1Q96RV3 2341 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 BSNQ9UPA5 3926 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 LIPFP07098 398 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 C20orf144Q9BQM9 153 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 MLST8Q9BVC4 326 aa16.93■□□□□ 0.3
VPS28-205ENST00000526204 APC2O95996 2303 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 IGHV3-21A0A0B4J1V1 117 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 A0A1W2PS18 150 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 FAM90A27PA6NNH2 459 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 TOMM40O96008 361 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 PRB3Q04118 309 aaPredicted RBP16.92■□□□□ 0.3
VPS28-205ENST00000526204 PLGLAQ15195 96 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 ATP5L2Q7Z4Y8 100 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 RBM14Q96PK6 669 aaKnown RBP16.92■□□□□ 0.3
VPS28-205ENST00000526204 TBL2Q9Y4P3 447 aaKnown RBP16.92■□□□□ 0.3
VPS28-205ENST00000526204 SMG1Q96Q15 3661 aaKnown RBP16.92■□□□□ 0.3
VPS28-205ENST00000526204 CEP295Q9C0D2 2601 aa16.92■□□□□ 0.3
VPS28-205ENST00000526204 IGLC1P0CG04 106 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 CDKN1AP38936 164 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 AMTP48728 403 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 LY6G5BQ8NDX9 201 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 MRPL27Q9P0M9 148 aaKnown RBP16.91■□□□□ 0.3
VPS28-205ENST00000526204 ZNF324O75467 553 aaPredicted RBP16.91■□□□□ 0.3
VPS28-205ENST00000526204 SLAQ13239 276 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 TMEM190Q8WZ59 177 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 NEU1Q99519 415 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 Q9H3A6 140 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 TMEM14CQ9P0S9 112 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 ONECUT1Q9UBC0 465 aa16.91■□□□□ 0.3
VPS28-205ENST00000526204 I3L2K1 104 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 PSG1P11464 419 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 VN1R17PQ8TDU5 208 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 RCHY1Q96PM5 261 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 FAM103A1Q9BTL3 118 aaKnown RBP16.9■□□□□ 0.3
VPS28-205ENST00000526204 NRN1Q9NPD7 142 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 ADGRG4Q8IZF6 3080 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 HIGD1CA8MV81 97 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 SIAH2O43255 324 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 LTAP01374 205 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 TCRAP04437 139 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 CT83Q5H943 113 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 RASL11BQ9BPW5 248 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 VAMP8Q9BV40 100 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 FBXL7Q9UJT9 491 aa16.9■□□□□ 0.3
VPS28-205ENST00000526204 LYZP61626 148 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 WNT10AQ9GZT5 417 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 CBLN4Q9NTU7 201 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 ZNF492Q9P255 531 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 RPH3ALQ9UNE2 315 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 PIEZO2Q9H5I5 2752 aa16.89■□□□□ 0.29
VPS28-205ENST00000526204 M0R143 59 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 CNIH1O95406 144 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 HTR1DP28221 377 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 KRTDAPP60985 99 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 LEMD1Q68G75 181 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 LHFPL4Q7Z7J7 247 aa16.88■□□□□ 0.29
VPS28-205ENST00000526204 PRSS22Q9GZN4 317 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms