RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CACNG8Q8WXS5 425 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 RAXQ9Y2V3 346 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 PRCDQ00LT1 54 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 DTX1Q86Y01 620 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 LINC00527Q9UJ94 153 aa9.63□□□□□ -0.87
SYNPO-204ENST00000519664 SCGB1C2P0DMR2 95 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 ERASQ7Z444 233 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM133Q9H2Q1 129 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 STAG3L2P0CL84 134 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 STAG3L3P0CL85 134 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 ATP5J2P56134 94 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 SRSF7Q16629 238 aaKnown RBP eCLIP9.62□□□□□ -0.87
SYNPO-204ENST00000519664 FAM90A2PQ658T7 463 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM200BQ69YZ2 307 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 CLEC2AQ6UVW9 174 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 ANKRD11Q6UB99 2663 aaPredicted RBP9.62□□□□□ -0.87
SYNPO-204ENST00000519664 HBBP68871 147 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 LY6DQ14210 128 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 CDPF1Q6NVV7 123 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 RAB37Q96AX2 223 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 LINC00479Q96M42 142 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 Q9H3A6 140 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 LAMA3Q16787 3333 aa9.62□□□□□ -0.87
SYNPO-204ENST00000519664 TIMM23O14925 209 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 COMPP49747 757 aaPredicted RBP9.61□□□□□ -0.87
SYNPO-204ENST00000519664 SPACA3Q8IXA5 215 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 METTL26Q96S19 204 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 NRN1Q9NPD7 142 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 CHD8Q9HCK8 2581 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 TRAV30A0A087WSZ9 112 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 C20orf144Q9BQM9 153 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 FBXL7Q9UJT9 491 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 A0A0C4DFX4 3053 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 TRAV1-1A0A0B4J248 108 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 LYPD2Q6UXB3 125 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 AP5S1Q9NUS5 200 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 ANAPC10Q9UM13 185 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 SPTBN4Q9H254 2564 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM136Q6ZRR5 245 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 MBNL3Q9NUK0 354 aaKnown RBP9.61□□□□□ -0.87
SYNPO-204ENST00000519664 C21orf62Q9NYP8 219 aa9.61□□□□□ -0.87
SYNPO-204ENST00000519664 F11RQ9Y624 299 aaKnown RBP9.61□□□□□ -0.87
SYNPO-204ENST00000519664 ATP5IP56385 69 aaPredicted RBP9.6□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM30BQ3MIR4 351 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 TM4SF20Q53R12 229 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 LYRM7Q5U5X0 104 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 GPR82Q96P67 336 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 TRAV9-1A0A075B6T8 112 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 TRBV6-6A0A0A6YYG2 114 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 A0A1B0GUS0 222 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 IGHV3-11P01762 117 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 TEX45Q8NA69 505 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 ZNF502Q8TBZ5 544 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 A0A0G2JNJ9 132 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 PPIFP30405 207 aaKnown RBP9.6□□□□□ -0.87
SYNPO-204ENST00000519664 MYOZ3Q8TDC0 251 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 ASCL2Q99929 193 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 Q9UFV3 132 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 POLR3KQ9Y2Y1 108 aaPredicted RBP9.6□□□□□ -0.87
SYNPO-204ENST00000519664 CX3CL1P78423 397 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 Q6ZS49 121 aa9.6□□□□□ -0.87
SYNPO-204ENST00000519664 KLRB1Q12918 225 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 SRSF9Q13242 221 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNPO-204ENST00000519664 PRR30Q53SZ7 412 aaPredicted RBP9.59□□□□□ -0.87
SYNPO-204ENST00000519664 TRAV8-1A0A0A6YYK1 113 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 A1L4Q6 167 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 NPPCP23582 126 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 DGAT2L7PQ6IED9 249 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 TMEM70Q9BUB7 260 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 IL15RAQ13261 267 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 CLEC19AQ6UXS0 136 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 SORL1Q92673 2214 aa9.59□□□□□ -0.87
SYNPO-204ENST00000519664 USP9YO00507 2555 aaPredicted RBP9.59□□□□□ -0.87
SYNPO-204ENST00000519664 IGLV3-1P01715 115 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 IGHG3P01860 377 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 HLA-DRB1P01911 266 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 KLRD1Q13241 179 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 EXOC3-AS1Q8N2X6 119 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 FGF23Q9GZV9 251 aaPredicted RBP9.58□□□□□ -0.88
SYNPO-204ENST00000519664 ALPK3Q96L96 1907 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 NUP210Q8TEM1 1887 aaPredicted RBP9.58□□□□□ -0.88
SYNPO-204ENST00000519664 TCRBV4S1A1TA0A5B7 111 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 RBPMS2Q6ZRY4 209 aaKnown RBP9.58□□□□□ -0.88
SYNPO-204ENST00000519664 LYPD6Q86Y78 171 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 SIGMAR1Q99720 223 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 EPDR1Q9UM22 224 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 A0A1B0GUT8 65 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 CDKN1BP46527 198 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 HIVEP3Q5T1R4 2406 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 TRAV9-2A0A087WT02 112 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 APOHP02749 345 aaPredicted RBP9.58□□□□□ -0.88
SYNPO-204ENST00000519664 ADIPOQQ15848 244 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF726P1Q15940 193 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 COX11Q9Y6N1 276 aa9.58□□□□□ -0.88
SYNPO-204ENST00000519664 EML6Q6ZMW3 1958 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 A0A1W2PRE2 83 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 M0R381 172 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF672Q499Z4 452 aaPredicted RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 ACTL10Q5JWF8 245 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 FAM74A4Q5TZK3 123 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms