RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 TRBV12-3P01733 135 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 CTSGP08311 255 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 RD3LP0DJH9 198 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 AP2S1P53680 142 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 H2BFSP57053 126 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 PAFAH1B2P68402 229 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 FCN2Q15485 313 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 GTSCR1Q86UQ5 136 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM252Q8N6L7 170 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF709Q8N972 641 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 THAP8Q8NA92 274 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 NPIPB3Q92617 1050 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 PPP1R14BQ96C90 147 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 FNDC4Q9H6D8 234 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 MBD2Q9UBB5 411 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 FBXL17Q9UF56 701 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 RABAC1Q9UI14 185 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 PUS1Q9Y606 427 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 S4R3C0 116 aa5.93□□□□□ -1.46
LIMCH1-222ENST00000515847 TRAV14DV4A0A0A6YYC5 116 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 HELTA6NFD8 242 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 C2orf70A6NJV1 201 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 G3V4G9 280 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 IL4P05112 153 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 HNRNPCP07910 306 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 IGLL1P15814 213 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 NPPCP23582 126 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 EWSR1Q01844 656 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 IL15RAQ13261 267 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 GAMTQ14353 236 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 C11orf87Q6NUJ2 197 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 RBPMS2Q6ZRY4 209 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 OR2T35Q8NGX2 323 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM170AQ8WVE7 144 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 RNF125Q96EQ8 232 aa5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 PRKDCP78527 4128 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-222ENST00000515847 FXYD6-FXYD2A0A087WZ82 144 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 IGHV7-4-1A0A0J9YVY3 117 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 UBE2L5PA0A1B0GUS4 154 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 OR4C46A6NHA9 309 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 PRSS46E5RG02 174 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 F8W735 103 aaPredicted RBP5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 CCNKO75909 580 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 CST7O76096 145 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 GHRHP01286 108 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 IGHV3-48P01763 117 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 LYL1P12980 280 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 FOLR2P14207 255 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 C4BPBP20851 252 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 RPL12P30050 165 aaKnown RBP5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 ADMP35318 185 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 MEOX2P50222 304 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 PAX9P55771 341 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 CMC4P56277 68 aaPredicted RBP5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 LYZP61626 148 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 TIGITQ495A1 244 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 Q6ZRG5 221 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 CYP2G1PQ6ZSU1 146 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM217Q8N7C4 229 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 OR11H7Q8NGC8 314 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 OR1L4Q8NGR5 311 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 SCGB1C1Q8TD33 95 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 GPR82Q96P67 336 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 PFDN5Q99471 154 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 ATP5SQ99766 215 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 SPAG8Q99932 426 aaPredicted RBP5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 CHRDL1Q9BU40 450 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 MRPL18Q9H0U6 180 aaKnown RBP5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 HSPB11Q9Y547 144 aa5.91□□□□□ -1.46
LIMCH1-222ENST00000515847 BORCS7-ASMTA0A0B4J1R7 106 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 IGHV3-35A0A0C4DH35 117 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 IGSF23A1L1A6 192 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 TMEM213A2RRL7 107 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 FAM24AA6NFZ4 105 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 TAAR5O14804 337 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 IGKV1-17P01599 117 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 IGLV1-51P01701 117 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 CXCL3P19876 107 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 CBLN1P23435 193 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 CAMLGP49069 296 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 EIF5AP63241 154 aaKnown RBP5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 VWC2Q2TAL6 325 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 C1orf194Q5T5A4 169 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 KPRPQ5T749 579 aaPredicted RBP5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 TOMM20LQ6UXN7 152 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 STPG3Q8N7X2 389 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 OR5C1Q8NGR4 320 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 AQP10Q96PS8 301 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 RNF2Q99496 336 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 PBDC1Q9BVG4 233 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 C11orf1Q9H5F2 150 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 OR5AC2Q9NZP5 309 aa5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 ZNF256Q9Y2P7 627 aaPredicted RBP5.9□□□□□ -1.46
LIMCH1-222ENST00000515847 TRAV2A0A0B4J234 112 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 PMS2P5A8MQ11 134 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 COX7A2P2O60397 106 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 HYPMO75409 117 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 CSN3P07498 182 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 LINC00869P0C866 280 aa5.89□□□□□ -1.47
LIMCH1-222ENST00000515847 C8orf88P0DMB2 117 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms