RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 VAMP1P23763 118 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 GPX4P36969 197 aaPredicted RBP12.75□□□□□ -0.37
DDX41-217ENST00000515562 PSMG4Q5JS54 123 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 ACTL10Q5JWF8 245 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 SIGLEC15Q6ZMC9 328 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 OR51G1Q8NGK1 321 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 RNF125Q96EQ8 232 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 SLC35E1Q96K37 410 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 NRN1Q9NPD7 142 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 CCDC160A6NGH7 325 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 ZFP92A6NM28 416 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 KNCNA6PVL3 124 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 FAM90A26D6RGX4 464 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 FABP1P07148 127 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 GIG44P09565 113 aaPredicted RBP12.74□□□□□ -0.37
DDX41-217ENST00000515562 SLC25A6P12236 298 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 C4BPBP20851 252 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 NANOS2P60321 138 aaKnown RBP12.74□□□□□ -0.37
DDX41-217ENST00000515562 OR8G2PQ6IF36 304 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 LRTM2Q8N967 370 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 Q8NAQ8 132 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 FBXL17Q9UF56 701 aa12.74□□□□□ -0.37
DDX41-217ENST00000515562 PITX3O75364 302 aa12.73□□□□□ -0.37
DDX41-217ENST00000515562 MIFP14174 115 aa12.73□□□□□ -0.37
DDX41-217ENST00000515562 ZNF79Q15937 498 aa12.73□□□□□ -0.37
DDX41-217ENST00000515562 HRH4Q9H3N8 390 aa12.73□□□□□ -0.37
DDX41-217ENST00000515562 DEFB4AO15263 64 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 MED6O75586 246 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 RAB11AP62491 216 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 GAMTQ14353 236 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 CIB3Q96Q77 187 aaPredicted RBP12.72□□□□□ -0.37
DDX41-217ENST00000515562 RAB40CQ96S21 281 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 PBDC1Q9BVG4 233 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 TMED3Q9Y3Q3 217 aa12.72□□□□□ -0.37
DDX41-217ENST00000515562 AGRNO00468 2067 aa12.71□□□□□ -0.37
DDX41-217ENST00000515562 ZNF705EA8MWA4 302 aaPredicted RBP12.71□□□□□ -0.37
DDX41-217ENST00000515562 NUTF2P61970 127 aaKnown RBP12.71□□□□□ -0.37
DDX41-217ENST00000515562 LGALS9CQ6DKI2 356 aa12.71□□□□□ -0.37
DDX41-217ENST00000515562 CCDC190Q86UF4 302 aa12.71□□□□□ -0.37
DDX41-217ENST00000515562 C1QTNF4Q9BXJ3 329 aa12.71□□□□□ -0.37
DDX41-217ENST00000515562 IGKV1D-37A0A075B6S9 117 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 IGHV4-28A0A0C4DH34 117 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 C11orf94C9JXX5 98 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 SFT2D2O95562 160 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 TCTAP57738 103 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 RPP30P78346 268 aaKnown RBP12.7□□□□□ -0.38
DDX41-217ENST00000515562 ZNF90Q03938 601 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 PPP1R1AQ13522 171 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 SPANXN2Q5MJ10 180 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 CENPSQ8N2Z9 138 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 C2CD4CQ8TF44 421 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 TBC1D24Q9ULP9 559 aa12.7□□□□□ -0.38
DDX41-217ENST00000515562 ZNF701M0R085 212 aaPredicted RBP12.69□□□□□ -0.38
DDX41-217ENST00000515562 IAPPP10997 89 aa12.69□□□□□ -0.38
DDX41-217ENST00000515562 UBE2MP61081 183 aaKnown RBP12.69□□□□□ -0.38
DDX41-217ENST00000515562 LYZP61626 148 aa12.69□□□□□ -0.38
DDX41-217ENST00000515562 C1orf194Q5T5A4 169 aa12.69□□□□□ -0.38
DDX41-217ENST00000515562 TRGV9Q99603 122 aa12.69□□□□□ -0.38
DDX41-217ENST00000515562 PAIP2BQ9ULR5 123 aaKnown RBP12.69□□□□□ -0.38
DDX41-217ENST00000515562 SNRPGP15A8MWD9 76 aa12.68□□□□□ -0.38
DDX41-217ENST00000515562 RBMY1A1P0DJD3 496 aaKnown RBP12.68□□□□□ -0.38
DDX41-217ENST00000515562 RBMY1CP0DJD4 496 aa12.68□□□□□ -0.38
DDX41-217ENST00000515562 NKX2-1P43699 371 aaPredicted RBP12.68□□□□□ -0.38
DDX41-217ENST00000515562 RBMY1FQ15415 496 aaKnown RBP12.68□□□□□ -0.38
DDX41-217ENST00000515562 CSNK1G2-AS1Q8NCQ2 148 aa12.68□□□□□ -0.38
DDX41-217ENST00000515562 RBM38Q9H0Z9 239 aaKnown RBP12.68□□□□□ -0.38
DDX41-217ENST00000515562 CLEC5AQ9NY25 188 aa12.68□□□□□ -0.38
DDX41-217ENST00000515562 X6R8D5 127 aa12.68□□□□□ -0.38
DDX41-217ENST00000515562 H3BMM0 161 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 SYNGR2O43760 224 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 CFDP00746 253 aaPredicted RBP12.67□□□□□ -0.38
DDX41-217ENST00000515562 HLA-DRB4P13762 266 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 INPP1P49441 399 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 SAMD13Q5VXD3 122 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 THAP8Q8NA92 274 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 SRRQ9GZT4 340 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 HLA-DRB4X5D2U9 266 aa12.67□□□□□ -0.38
DDX41-217ENST00000515562 HOXB5P09067 269 aa12.66□□□□□ -0.38
DDX41-217ENST00000515562 ID1P41134 155 aa12.66□□□□□ -0.38
DDX41-217ENST00000515562 PSMB3P49720 205 aa12.66□□□□□ -0.38
DDX41-217ENST00000515562 PPP1R14BQ96C90 147 aa12.66□□□□□ -0.38
DDX41-217ENST00000515562 MAGT1Q9H0U3 335 aa12.66□□□□□ -0.38
DDX41-217ENST00000515562 IGKV1OR2-108A0A075B7D4 117 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 NAP1L6A6NFF2 107 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 OR2F1Q13607 317 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 GGNBP1Q5YKI7 109 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 TRIQKQ629K1 86 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 COQ8AQ8NI60 647 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 XCL2Q9UBD3 114 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 KMT2AQ03164 3969 aa12.65□□□□□ -0.38
DDX41-217ENST00000515562 PRSS46E5RG02 174 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 WRBO00258 174 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 HLA-DMBP28068 263 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 FOXI2Q6ZQN5 318 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 OR8I2Q8N0Y5 310 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 RPP25LQ8N5L8 163 aaKnown RBP12.64□□□□□ -0.39
DDX41-217ENST00000515562 WDR12Q9GZL7 423 aaKnown RBP12.64□□□□□ -0.39
DDX41-217ENST00000515562 SAV1Q9H4B6 383 aaPredicted RBP12.64□□□□□ -0.39
DDX41-217ENST00000515562 SLC45A2Q9UMX9 530 aa12.64□□□□□ -0.39
DDX41-217ENST00000515562 ELOA3CA0A087WX78 387 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms