RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 Q6ZS49 121 aa10.43□□□□□ -0.74
USP53-209ENST00000514665 CIARTQ8N365 385 aaPredicted RBP10.43□□□□□ -0.74
USP53-209ENST00000514665 A1L4Q6 167 aa10.43□□□□□ -0.74
USP53-209ENST00000514665 KLF17Q5JT82 389 aaPredicted RBP10.43□□□□□ -0.74
USP53-209ENST00000514665 LAMTOR2Q9Y2Q5 125 aa10.43□□□□□ -0.74
USP53-209ENST00000514665 CRXO43186 299 aaPredicted RBP10.42□□□□□ -0.74
USP53-209ENST00000514665 FER1L6-AS1Q8NA97 138 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 ZNRD1Q9P1U0 126 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 C2CD3Q4AC94 2353 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 TICRRQ7Z2Z1 1910 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 PLXNA2O75051 1894 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 LY6G6EA0A0G2JKS1 128 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 TMEM200BQ69YZ2 307 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 FAM159AQ6UWV7 190 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 ORMDL3Q8N138 153 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 DDB2Q92466 427 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 CRIM1Q9NZV1 1036 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 U3KQA8 63 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 IGKV1-16P04430 117 aa10.42□□□□□ -0.74
USP53-209ENST00000514665 FAM90A9PA6NNJ1 464 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 OR11H12B2RN74 326 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 PDLIM4P50479 330 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 OR11H1Q8NG94 326 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 OR11H2Q8NH07 326 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 CYYR1Q96J86 154 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 PIMREGQ9BSJ6 248 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 OTORQ9NRC9 128 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 LINC00527Q9UJ94 153 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 PSG8Q9UQ74 426 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 LAMA2P24043 3122 aaKnown RBP10.41□□□□□ -0.74
USP53-209ENST00000514665 ZNF503-AS2A6NEH8 195 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 ZNF56Q15929 161 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 EXOC3-AS1Q8N2X6 119 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 NUDT10Q8NFP7 164 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 NUDT11Q96G61 164 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 ZNF257Q9Y2Q1 563 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 PMS2P5A8MQ11 134 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 PAX9P55771 341 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 FOXL1Q12952 345 aa10.41□□□□□ -0.74
USP53-209ENST00000514665 NEU4Q8WWR8 484 aaPredicted RBP10.41□□□□□ -0.74
USP53-209ENST00000514665 MBNL3Q9NUK0 354 aaKnown RBP10.41□□□□□ -0.74
USP53-209ENST00000514665 ZNF474Q6S9Z5 364 aaPredicted RBP10.4□□□□□ -0.74
USP53-209ENST00000514665 GNB1LQ9BYB4 327 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 ANAPC10Q9UM13 185 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 TRAV8-1A0A0A6YYK1 113 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 PSG1P11464 419 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 CSRP1P21291 193 aaKnown RBP10.4□□□□□ -0.74
USP53-209ENST00000514665 LINC00479Q96M42 142 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 FOXC2Q99958 501 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 RAXQ9Y2V3 346 aa10.4□□□□□ -0.74
USP53-209ENST00000514665 TMEM238LA0A1B0GVL6 79 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 A6NJY4 79 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 LY6HO94772 140 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 PCP4P48539 62 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 LCN12Q6JVE5 192 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 SYT8Q8NBV8 401 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 KIR2DL4Q99706 377 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 SCRT1Q9BWW7 348 aa10.4□□□□□ -0.75
USP53-209ENST00000514665 SOX21Q9Y651 276 aaPredicted RBP10.4□□□□□ -0.75
USP53-209ENST00000514665 SNCGO76070 127 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 PRSS8Q16651 343 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 GLMPQ8WWB7 406 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 MYO9AB2RTY4 2548 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 LINC00614P0C842 121 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 FAM71F2Q6NXP2 309 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 RNF166Q96A37 237 aaPredicted RBP10.39□□□□□ -0.75
USP53-209ENST00000514665 NPIPB5A8MRT5 1133 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 ZNF672Q499Z4 452 aaPredicted RBP10.39□□□□□ -0.75
USP53-209ENST00000514665 TSKUQ8WUA8 353 aa10.39□□□□□ -0.75
USP53-209ENST00000514665 FABP5P3A8MUU1 101 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 NPIPB6E9PJ23 425 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 IGKV1-39P01597 117 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 IGKV1D-39P04432 117 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 IGHV1-8P0DP01 117 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 RHOGP84095 191 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 TMEM170BQ5T4T1 132 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 NIT1Q86X76 327 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 C7orf69Q9H7B7 122 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 SELENOKQ9Y6D0 94 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 TMEM178BH3BS89 294 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 AREGP15514 252 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 SPACA3Q8IXA5 215 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 IGHV2-26A0A0B4J1V2 119 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 A0A1B0GUS0 222 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 HAX1O00165 279 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 Q6AWC8 147 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 RPRMLQ8N4K4 120 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 COX6B1P14854 86 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 PVRIGQ6DKI7 326 aa10.38□□□□□ -0.75
USP53-209ENST00000514665 CENPVQ7Z7K6 275 aaPredicted RBP10.38□□□□□ -0.75
USP53-209ENST00000514665 PEF1Q9UBV8 284 aaKnown RBP10.38□□□□□ -0.75
USP53-209ENST00000514665 TNCP24821 2201 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 TRAV9-2A0A087WT02 112 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 WNT2P09544 360 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 FBLN7Q53RD9 439 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 WDR86Q86TI4 376 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 KLRD1Q13241 179 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 LYPD2Q6UXB3 125 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 C8orf46Q8TAG6 207 aa10.37□□□□□ -0.75
USP53-209ENST00000514665 GAFA1Q96PS6 74 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms