RNA–Protein interactions for RNA: ENST00000514654.5

ATP2C1-222, Transcript of ATPase secretory pathway Ca2+ transporting 1, human

TSL 1 (best)

Gene ATP2C1, Length 4,730 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATP2C1-222	ENST00000514654	NBL1	P41271	181 aa		5.04	□□□□□ -1.6
ATP2C1-222	ENST00000514654	FAM71F2	Q6NXP2	309 aa		5.04	□□□□□ -1.6
ATP2C1-222	ENST00000514654	ZNF329	Q86UD4	541 aa		5.04	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TMEM167A	Q8TBQ9	72 aa		5.04	□□□□□ -1.6
ATP2C1-222	ENST00000514654	NUP210	Q8TEM1	1887 aa	Predicted RBP	5.04	□□□□□ -1.6
ATP2C1-222	ENST00000514654	IGKV3OR2-268	A0A0C4DH90	116 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	FAM90A9P	A6NNJ1	464 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	STAG3L2	P0CL84	134 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	STAG3L3	P0CL85	134 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	GRN	P28799	593 aa	Known RBP	5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TAS2R60	P59551	318 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	FBLN7	Q53RD9	439 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	ZNF600	Q6ZNG1	722 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TEX29	Q8N6K0	151 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	REG4	Q9BYZ8	158 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	NPFFR1	Q9GZQ6	430 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	CDC42EP3	Q9UKI2	254 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	SIGLEC9	Q9Y336	463 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	PLXNB3	Q9ULL4	1909 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	ABCA2	Q9BZC7	2435 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654		A0A1W2PRE2	83 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	CEACAM4	O75871	244 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TSPO	P30536	169 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	C5orf64	Q2M2E5	130 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	IGFL4	Q6B9Z1	124 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	PVRIG	Q6DKI7	326 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	OR1N2	Q8NGR9	330 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	RNF166	Q96A37	237 aa	Predicted RBP	5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	AGMAT	Q9BSE5	352 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	COL4A3	Q01955	1670 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TRAV41	A0A0B4J266	112 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	CNTFR	P26992	372 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	PSMB2	P49721	201 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	ERVK11-1	P61568	191 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	TMEM183A	Q8IXX5	376 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	OR10AG1	Q8NH19	301 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	FMC1	Q96HJ9	113 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	ATG101	Q9BSB4	218 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654	OTOR	Q9NRC9	128 aa		5.03	□□□□□ -1.6
ATP2C1-222	ENST00000514654		A0A087WWC5	75 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	C7orf71	A4D174	169 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654		M0R3E3	92 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	GZMB	P10144	247 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	FOLR2	P14207	255 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	LMO1	P25800	156 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	NDP	Q00604	133 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	OR4X2	Q8NGF9	303 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	PRELID3A	Q96N28	172 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ASCL2	Q99929	193 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	PSG8	Q9UQ74	426 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ZNF324	O75467	553 aa	Predicted RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGKV1-39	P01597	117 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	APOH	P02749	345 aa	Predicted RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGKV1D-39	P04432	117 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	CXCL1	P09341	107 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	TEX38	Q6PEX7	206 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	C8orf46	Q8TAG6	207 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	PRSS22	Q9GZN4	317 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	TBL2	Q9Y4P3	447 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	F11R	Q9Y624	299 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	FBLL1	A6NHQ2	334 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	NPIPB5	A8MRT5	1133 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	CRX	O43186	299 aa	Predicted RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SNAI2	O43623	268 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SAA4	P35542	130 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ZNF134	P52741	427 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SRSF4	Q08170	494 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	AMMECR1L	Q6DCA0	310 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	GTF2H5	Q6ZYL4	71 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	FER1L6-AS1	Q8NA97	138 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	TRAV8-1	A0A0A6YYK1	113 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	TRBV9	A0A0B4J1U6	114 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654		A0A1B0GWJ7	208 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654		C9JQL5	133 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	NPFF	O15130	113 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	NDUFS7	O75251	213 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGLV1-44	P01699	117 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	RNASE2	P10153	161 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	EMP1	P54849	157 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	RPL24	P83731	157 aa	Known RBP	5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	PAX8	Q06710	450 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	RUSC1-AS1	Q66K80	236 aa		5.02	□□□□□ -1.61
ATP2C1-222	ENST00000514654	NCOA6	Q14686	2063 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SERF1A	O75920	110 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGKV2D-40	P01614	121 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	IGLV3-1	P01715	115 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	DDT	P30046	118 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ASIP	P42127	132 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	VDAC2	P45880	294 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	DIAPH2-AS1	Q14236	149 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SPRN	Q5BIV9	151 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	CIART	Q8N365	385 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ARL6IP6	Q8N6S5	226 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	ST6GALNAC6	Q969X2	333 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	PMCHL2	Q9BQD1	86 aa		5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654	FGF23	Q9GZV9	251 aa	Predicted RBP	5.01	□□□□□ -1.61
ATP2C1-222	ENST00000514654		A0A1W2PPI3	338 aa		5.01	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms