RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TRBV25-1A0A075B6N4 114 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 TRBV6-6A0A0A6YYG2 114 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 NDUFV3P56181 108 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 PRR20EP86478 221 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 PRR20CP86479 221 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 PRR20DP86480 221 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 PRR20BP86481 221 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 PRR20AP86496 221 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 FAM159AQ6UWV7 190 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 POLDIP2Q9Y2S7 368 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 NPIPB11E5RHQ5 1161 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 RBP4P02753 201 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 C8orf88P0DMB2 117 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 DEFB103AP81534 67 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 ABHD17BQ5VST6 288 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 RBPMS2Q6ZRY4 209 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 FADS6Q8N9I5 356 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 PRRG4Q9BZD6 226 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 OR2H1Q9GZK4 316 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 LOC107984156A0A0G2JMH3 177 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 PRSS46E5RG02 174 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 PSMB2P49721 201 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 SMCPP49901 116 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 ALKBH6Q3KRA9 238 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 GTSCR1Q86UQ5 136 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 ARL17AQ8IVW1 177 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 Q8TCH9 128 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 ZNF296Q8WUU4 475 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 SVILO95425 2214 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 PTPRSQ13332 1948 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 IGHV3-13P01766 116 aa9.76□□□□□ -0.85
LIMCH1-213ENST00000511496 H3BVH4 76 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 MLANAQ16655 118 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 MEIG1Q5JSS6 88 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 HIST1H4GQ99525 98 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 EXPH5Q8NEV8 1989 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 A0A1W2PQM1 296 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 OR2H2O95918 312 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 PLAUP00749 431 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 RRN3P1Q2M238 152 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 RPRMLQ8N4K4 120 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 IFI27L1Q96BM0 104 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 INTS1Q8N201 2190 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 DOCK7Q96N67 2140 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 ASXL3Q9C0F0 2248 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 A0A096LNJ9 63 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 KIR2DS5A0A0G2JLQ3 304 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 A0A0G2JNG1 304 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 FAM90A9PA6NNJ1 464 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 KIR2DS3K7RE56 304 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 NGFP01138 241 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 KIR2DS5Q14953 304 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 AJUBAQ96IF1 538 aa9.75□□□□□ -0.85
LIMCH1-213ENST00000511496 TGFAP01135 160 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 LINC00271P0C7V0 271 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 ENY2Q9NPA8 101 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 TNCP24821 2201 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 PRB4P10163 310 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 MYOD1P15172 320 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 ZNF766Q5HY98 468 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 MOGAT3Q86VF5 341 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 ZBTB34Q8NCN2 500 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 CARD19Q96LW7 228 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 SLC25A33Q9BSK2 321 aa9.74□□□□□ -0.85
LIMCH1-213ENST00000511496 MOSP00540 346 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 ZNF497Q6ZNH5 498 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 FOXB1Q99853 325 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 SPXQ9BT56 116 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 IGFLR1Q9H665 355 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 EVI2AP22794 236 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 COL8A1P27658 744 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 ERVK-16P61578 105 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 C8orf46Q8TAG6 207 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 URB1O60287 2271 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 B9A039 149 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 C12orf77C9JDV5 145 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 H3BTX0 84 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 SNCGO76070 127 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 IFITM1P13164 125 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 CFAP126Q5VTH2 177 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 IGF2-ASQ6U949 168 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 ZNF329Q86UD4 541 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 OR9G1Q8NH87 305 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 PPDPFLQ8WWR9 84 aa9.73□□□□□ -0.85
LIMCH1-213ENST00000511496 IGKV1OR2-108A0A075B7D4 117 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 CFHR5Q9BXR6 569 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 MAP1LC3AQ9H492 121 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 A0A096LPE4 126 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 TRAV4A0A0B4J268 109 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 A0A1W2PPZ6 126 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 PRSS1P07477 247 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 ARMS2P0C7Q2 107 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 Q6P435 159 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 PAXXQ9BUH6 204 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 FSCN3Q9NQT6 498 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 PGPA6NDG6 321 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 SLC25A53Q5H9E4 307 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 HIGD1BQ9P298 99 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 CHD7Q9P2D1 2997 aa9.72□□□□□ -0.85
LIMCH1-213ENST00000511496 PI4KAP42356 2102 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms