RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 IGKV3-7A0A075B6H7 116 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 PRSS46E5RG02 174 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 CHEK1O14757 476 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 PET100P0DJ07 73 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 C8orf88P0DMB2 117 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 PSG1P11464 419 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 DLK1P80370 383 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 SLC38A11Q08AI6 406 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 IL15RAQ13261 267 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 OXA1LQ15070 435 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM61Q8N0U2 210 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 OR51G1Q8NGK1 321 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 PPP1R1CQ8WVI7 109 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 PPP1R14BQ96C90 147 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 ZNF414Q96IQ9 312 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 TRGV9Q99603 122 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM231Q9H6L2 316 aa8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 LYRM2Q9NU23 88 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-210ENST00000509454 A0A1W2PS18 150 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 IGSF23A1L1A6 192 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 PMS2P5A8MQ11 134 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 E5RGE8 158 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 APOHP02749 345 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 CD81P60033 236 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 ARL16Q0P5N6 197 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 THAP8Q8NA92 274 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 ST8SIA2Q92186 375 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 GRAMD2BQ96HH9 432 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 RNF2Q99496 336 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 SLC25A31Q9H0C2 315 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 OR5AC2Q9NZP5 309 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 RABAC1Q9UI14 185 aa8.62□□□□□ -1.03
LIMCH1-210ENST00000509454 IGKV1D-37A0A075B6S9 117 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 HNRNPCP07910 306 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 CXCL3P19876 107 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 TFPI2P48307 235 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 SULT1A1P50225 295 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 HBG1P69891 147 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 HBG2P69892 147 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 TCF24Q7RTU0 167 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM144Q7Z5S9 345 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM252Q8N6L7 170 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 BPIFCQ8NFQ6 507 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 RNF125Q96EQ8 232 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 NPVFQ9HCQ7 196 aa8.61□□□□□ -1.03
LIMCH1-210ENST00000509454 IGKV1OR2-108A0A075B7D4 117 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 TRAV25A0A0B4J276 109 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 ZNF785A8K8V0 405 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 MPC2O95563 127 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 P2RY1P47900 373 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 USF2Q15853 346 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 TEPPQ6URK8 271 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 WFDC3Q8IUB2 231 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 GBGT1Q8N5D6 347 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 OR11H7Q8NGC8 314 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 THAP6Q8TBB0 222 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 C11orf1Q9H5F2 150 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 UQCC1Q9NVA1 299 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 MBD2Q9UBB5 411 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 PFDN2Q9UHV9 154 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 SMAD5-AS1Q9Y6J3 95 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 MEGF8Q7Z7M0 2845 aa8.6□□□□□ -1.03
LIMCH1-210ENST00000509454 UBE2L5PA0A1B0GUS4 154 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 H0YIZ8 118 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 DNASE2O00115 360 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 DFFBO76075 338 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 ORM2P19652 201 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 GATA2P23769 480 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 CRYBB3P26998 211 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 S100A11P31949 105 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 BAXQ07812 192 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 CYP2G1PQ6ZSU1 146 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 OR1B1Q8NGR6 318 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 NEURL2Q9BR09 285 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM147Q9BVK8 224 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 GGACTQ9BVM4 153 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 TUBA4BQ9H853 241 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 DOK5Q9P104 306 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 OR4C46A6NHA9 309 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 FNDC10F2Z333 226 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 TSPAN4O14817 238 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 CFDP00746 253 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 NUP62P37198 522 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 EIF2B2P49770 351 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 PAFAH1B2P68402 229 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 EWSR1Q01844 656 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 NHLH2Q02577 135 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 RAB31Q13636 194 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 CLINT1Q14677 625 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 STXBP6Q8NFX7 210 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 SPAG8Q99932 426 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 VSIRQ9H7M9 311 aa8.59□□□□□ -1.03
LIMCH1-210ENST00000509454 CD5P06127 495 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 CD7P09564 240 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 LINC00869P0C866 280 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 FGF7P21781 194 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 ZNF546Q86UE3 836 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 OR5C1Q8NGR4 320 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 RNF126Q9BV68 326 aa8.58□□□□□ -1.04
LIMCH1-210ENST00000509454 UBQLN2Q9UHD9 624 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms