RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 H2BFSP57053 126 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 SELENOTP62341 195 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 PAFAH1B2P68402 229 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 BAXQ07812 192 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 FGL1Q08830 312 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 OXA1LQ15070 435 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 GUCA2BQ16661 112 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 LRRC37A5PQ49AS3 106 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 TEPPQ6URK8 271 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 BTNL8Q6UX41 500 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 LILRB2Q8N423 598 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 THAP8Q8NA92 274 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 BPIFCQ8NFQ6 507 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 PPP1R1CQ8WVI7 109 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 RNF125Q96EQ8 232 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 SPAG8Q99932 426 aaPredicted RBP6.92□□□□□ -1.3
NUP54-207ENST00000508583 ZFAND3Q9H8U3 227 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 NPVFQ9HCQ7 196 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 MRPL36Q9P0J6 103 aaKnown RBP6.92□□□□□ -1.3
NUP54-207ENST00000508583 RABAC1Q9UI14 185 aa6.92□□□□□ -1.3
NUP54-207ENST00000508583 HELTA6NFD8 242 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 OR4C46A6NHA9 309 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 CHEK1O14757 476 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 TSPAN4O14817 238 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 ZNF207O43670 478 aaKnown RBP6.91□□□□□ -1.3
NUP54-207ENST00000508583 HNRNPCP07910 306 aaKnown RBP eCLIP6.91□□□□□ -1.3
NUP54-207ENST00000508583 PSG1P11464 419 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 LORP23490 312 aaPredicted RBP6.91□□□□□ -1.3
NUP54-207ENST00000508583 CRYBB3P26998 211 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 P2RY1P47900 373 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 AP2S1P53680 142 aaPredicted RBP6.91□□□□□ -1.3
NUP54-207ENST00000508583 CMC4P56277 68 aaPredicted RBP6.91□□□□□ -1.3
NUP54-207ENST00000508583 SLC38A11Q08AI6 406 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 ATP6V1FQ16864 119 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 ZNF546Q86UE3 836 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 TMEM252Q8N6L7 170 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 THAP6Q8TBB0 222 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 PRR25Q96S07 402 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 RHPN1-AS1Q9BWJ2 59 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 MLXQ9UH92 298 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 SLC45A2Q9UMX9 530 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 SMAD5-AS1Q9Y6J3 95 aa6.91□□□□□ -1.3
NUP54-207ENST00000508583 IGHV3OR16-8A0A075B7F1 116 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 PMS2P5A8MQ11 134 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 SIX6O95475 246 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 GIPP09681 153 aaPredicted RBP6.9□□□□□ -1.3
NUP54-207ENST00000508583 RRAS2P62070 204 aaPredicted RBP6.9□□□□□ -1.3
NUP54-207ENST00000508583 RPL11P62913 178 aaKnown RBP6.9□□□□□ -1.3
NUP54-207ENST00000508583 DEFB121Q5J5C9 76 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 PXDC1Q5TGL8 231 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 ADAMTSL5Q6ZMM2 481 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 HAPLN4Q86UW8 402 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 TMEM61Q8N0U2 210 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 TMEM217Q8N7C4 229 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 PPP1R14BQ96C90 147 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 PBDC1Q9BVG4 233 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 TMEM147Q9BVK8 224 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 VSIRQ9H7M9 311 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 UQCC1Q9NVA1 299 aa6.9□□□□□ -1.3
NUP54-207ENST00000508583 IGKV1D-37A0A075B6S9 117 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 TRAV2A0A0B4J234 112 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 WI2-2373I1.2A0A1W2PRP0 233 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 FAM24AA6NFZ4 105 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 K7EIL1 84 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 DNASE2O00115 360 aaPredicted RBP6.89□□□□□ -1.31
NUP54-207ENST00000508583 MPDU1O75352 247 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 CST7O76096 145 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 MPC2O95563 127 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 CD81P60033 236 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 RAP2BP61225 183 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 LYZP61626 148 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 ZNF90Q03938 601 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 C1orf194Q5T5A4 169 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 SAMD13Q5VXD3 122 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 CYP2G1PQ6ZSU1 146 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 TCF24Q7RTU0 167 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 ST8SIA2Q92186 375 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 WDR89Q96FK6 387 aaPredicted RBP6.89□□□□□ -1.31
NUP54-207ENST00000508583 C11orf1Q9H5F2 150 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 KCNIP2Q9NS61 270 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 FBXL17Q9UF56 701 aa6.89□□□□□ -1.31
NUP54-207ENST00000508583 IGKV1OR2-108A0A075B7D4 117 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 IZUMO1RA6ND01 250 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 DFFBO76075 338 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 CXCL3P19876 107 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 EWSR1Q01844 656 aaKnown RBP eCLIP6.88□□□□□ -1.31
NUP54-207ENST00000508583 FCN2Q15485 313 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 USF2Q15853 346 aaPredicted RBP6.88□□□□□ -1.31
NUP54-207ENST00000508583 VWC2Q2TAL6 325 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 GPR82Q96P67 336 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 RNF2Q99496 336 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 FAM110AQ9BQ89 295 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 NEURL2Q9BR09 285 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 TUBA4BQ9H853 241 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 OR5AC2Q9NZP5 309 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 MBD2Q9UBB5 411 aa6.88□□□□□ -1.31
NUP54-207ENST00000508583 LSM4Q9Y4Z0 139 aaKnown RBP6.88□□□□□ -1.31
NUP54-207ENST00000508583 ELOA3CA0A087WX78 387 aaPredicted RBP6.87□□□□□ -1.31
NUP54-207ENST00000508583 IGHV3-49A0A0A0MS15 119 aa6.87□□□□□ -1.31
NUP54-207ENST00000508583 IGSF23A1L1A6 192 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms