RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MT-CO2P00403 227 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 IGHV4-30-4P0DP06 118 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 AKR1C1Q04828 323 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 EIF5AL1Q6IS14 154 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 IL34Q6ZMJ4 242 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 SCGB1C1Q8TD33 95 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 STAB2Q8WWQ8 2551 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 I3L2K1 104 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 K7EIM0 57 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 CSN3P07498 182 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 C15orf32Q32M92 178 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 LCN12Q6JVE5 192 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 TMEM144Q7Z5S9 345 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 GNPNAT1Q96EK6 184 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 NPVFQ9HCQ7 196 aa13.68□□□□□ -0.22
SQSTM1-209ENST00000504627 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 BMPR1BO00238 502 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 FGF7P21781 194 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 GAMTQ14353 236 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 FAM209BQ5JX69 171 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 TEX261Q6UWH6 196 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 GTSCR1Q86UQ5 136 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 Q8N1Y9 231 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 HSD17B11Q8NBQ5 300 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 PSMG3Q9BT73 122 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 KCNIP2Q9NS61 270 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 SIGLEC8Q9NYZ4 499 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 FBXL7Q9UJT9 491 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 TIMM9Q9Y5J7 89 aa13.67□□□□□ -0.22
SQSTM1-209ENST00000504627 C3orf84H3BNL1 204 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 RGS13O14921 159 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 IFNA7P01567 189 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 ATP6V0CP27449 155 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 IFITM2Q01629 132 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 TEPPQ6URK8 271 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 BTNL8Q6UX41 500 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 ZNF767PQ75MW2 155 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 TMEM116Q8NCL8 245 aa13.66□□□□□ -0.22
SQSTM1-209ENST00000504627 CFDP00746 253 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 SEC11BP0C7V7 166 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 SPP1P10451 314 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 RND2P52198 227 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 THAP8Q8NA92 274 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 ZNF680Q8NEM1 530 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 OR4X1Q8NH49 305 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 VN1R17PQ8TDU5 208 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 ACY3Q96HD9 319 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 NPCDR1Q9BY65 106 aa13.65□□□□□ -0.22
SQSTM1-209ENST00000504627 PPP5D1E7EU14 171 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 C17orf112F2Z3M2 114 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 GGCTO75223 188 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 IGHV3-23P01764 117 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 FCGR2BP31994 310 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 RAB31Q13636 194 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 OR2K2Q8NGT1 345 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 DYNLRB2Q8TF09 96 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 SCARB1Q8WTV0 552 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 CXorf58Q96LI9 332 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 TUBA4BQ9H853 241 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 C19orf73Q9NVV2 129 aa13.64□□□□□ -0.23
SQSTM1-209ENST00000504627 A8MZ25 164 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 NDUFB8O95169 186 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 MLANAQ16655 118 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 ZNF709Q8N972 641 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 OR2G3Q8NGZ4 309 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 MUC7Q8TAX7 377 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 TMED6Q8WW62 240 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 EEF1AKMT3Q96AZ1 226 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 ATP6V0BQ99437 205 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 MGST2Q99735 147 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 RSG1Q9BU20 258 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 GGTLC1Q9BX51 225 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 SH3BGRL3Q9H299 93 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 SLC25A32Q9H2D1 315 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 C21orf62Q9NYP8 219 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 MRPL36Q9P0J6 103 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 UBQLN2Q9UHD9 624 aa13.63□□□□□ -0.23
SQSTM1-209ENST00000504627 IZUMO1RA6ND01 250 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 MFSD2BA6NFX1 497 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 SCGB2A1O75556 95 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 OR2C1O95371 312 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 ARL3P36405 182 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 NPBWR1P48145 328 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 CAMLGP49069 296 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 MFAP4P55083 255 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 ALKAL2Q6UX46 152 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 CLEC19AQ6UXS0 136 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 NPIPB3Q92617 1050 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 TRGV9Q99603 122 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 TXN2Q99757 166 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 S4R3C0 116 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 RYR3Q15413 4870 aa13.62□□□□□ -0.23
SQSTM1-209ENST00000504627 IGKV1OR2-108A0A075B7D4 117 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 IGHV3-21A0A0B4J1V1 117 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 AGPAT2O15120 278 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 CLN5O75503 358 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 IGHV3-48P01763 117 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 SERF2P84101 59 aa13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 CD300EQ496F6 205 aaPredicted RBP13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 TM2D3Q9BRN9 247 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms