RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 HIST3H2BBQ8N257 126 aa16.68■□□□□ 0.26
CCDC88B-208ENST00000492980 GP9P14770 177 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 ERVFC1-1P60608 527 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 LYZP61626 148 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 HIGD1AQ9Y241 93 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 V9GYV3 84 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 NPIPB5A8MRT5 1133 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 PEX7O00628 323 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 GCGP01275 180 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 PDLIM4P50479 330 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 TAS2R60P59551 318 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 RPL15P61313 204 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 KLF17Q5JT82 389 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 RBM14Q96PK6 669 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 CDC42EP3Q9UKI2 254 aa16.67■□□□□ 0.26
CCDC88B-208ENST00000492980 CFAP46Q8IYW2 2715 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 PCP4L1A6NKN8 68 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 LINC00479Q96M42 142 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 WNK2Q9Y3S1 2297 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 RANP62826 216 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 LEMD1Q68G75 181 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 BLNKQ8WV28 456 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 FANCD2OSQ96PS1 177 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 GPR61Q9BZJ8 451 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 PITPNC1Q9UKF7 332 aa16.66■□□□□ 0.26
CCDC88B-208ENST00000492980 IGLV11-55A0A075B6I3 123 aa16.65■□□□□ 0.26
CCDC88B-208ENST00000492980 CNN1P51911 297 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-208ENST00000492980 GAR1Q9NY12 217 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-208ENST00000492980 TRAV9-1A0A075B6T8 112 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 GOSR1O95249 250 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 NBEAP1P0C6P0 100 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 RD3LP0DJH9 198 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 SAA4P35542 130 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 PDZD11Q5EBL8 140 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 FAM120AOSQ5T036 256 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 TTC9CQ8N5M4 171 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 RNASE7Q9H1E1 156 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 OSTCQ9NRP0 149 aa16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 SLC25A39Q9BZJ4 359 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 MRPL27Q9P0M9 148 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-208ENST00000492980 FABP1P07148 127 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 FAM106CPP0CH98 169 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 S100A2P29034 98 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 GNG5P63218 68 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 RPEL1Q2QD12 228 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 Q8N9W7 124 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 LPAR2Q9HBW0 351 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 IGSF10Q6WRI0 2623 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 ABCA1O95477 2261 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 ISLRO14498 428 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 MGST1P10620 155 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 AKAP6Q13023 2319 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 CCL19Q99731 98 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 EPDR1Q9UM22 224 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 POLR3KQ9Y2Y1 108 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 TRAPPC1Q9Y5R8 145 aa16.63■□□□□ 0.25
CCDC88B-208ENST00000492980 MED13LQ71F56 2210 aa16.62■□□□□ 0.25
CCDC88B-208ENST00000492980 IGHV7-81A0A0B4J1V7 117 aa16.62■□□□□ 0.25
CCDC88B-208ENST00000492980 ZNF600Q6ZNG1 722 aa16.62■□□□□ 0.25
CCDC88B-208ENST00000492980 TRAV34A0A0B4J273 112 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 PGPA6NDG6 321 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 TOMM40O96008 361 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 SLC25A5P05141 298 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 EGR2P11161 476 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 HIST1H1BP16401 226 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 COA6Q5JTJ3 125 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 TMEM183AQ8IXX5 376 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 NHLRC2Q8NBF2 726 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 TMEM14CQ9P0S9 112 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 S4R3C0 116 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 XKRY2A2RUG3 117 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 C1RLQ9NZP8 487 aa16.61■□□□□ 0.25
CCDC88B-208ENST00000492980 H3BTX0 84 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 NPFFO15130 113 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 RNF224P0DH78 156 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 BRS3P32247 399 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 YPEL3P61236 119 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 IBA57Q5T440 356 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 PIP4P2Q8N4L2 257 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 ZNF48Q96MX3 618 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 HLA-DRB1P01911 266 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 TMEM183BQ1AE95 376 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 ZNF491Q8N8L2 437 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 PIMREGQ9BSJ6 248 aa16.6■□□□□ 0.25
CCDC88B-208ENST00000492980 ASH1LQ9NR48 2969 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 F8W735 103 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 MFAP4P55083 255 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 BAGE2Q86Y30 109 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 OR10D4PQ8NGN7 298 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 FAM168AQ92567 244 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 SHANK2-AS3Q9BTD1 123 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 Q9H3A6 140 aa16.59■□□□□ 0.25
CCDC88B-208ENST00000492980 TRAV30A0A087WSZ9 112 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 CENPVL3A0A0U1RRI6 287 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 H3BRN7 92 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 GNG7O60262 68 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 OR8I2Q8N0Y5 310 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 C5orf17Q8NAS9 161 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 RNF125Q96EQ8 232 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 NIT2Q9NQR4 276 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms