RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SRSF9Q13242 221 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHOX2-205ENST00000490689 OR2K2Q8NGT1 345 aa10.52□□□□□ -0.73
SHOX2-205ENST00000490689 CHODLQ9H9P2 273 aa10.52□□□□□ -0.73
SHOX2-205ENST00000490689 MRPS18CQ9Y3D5 142 aaKnown RBP10.52□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV3OR16-13A0A075B7E8 117 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV3-74A0A0B4J1X5 117 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 LOC107984156A0A0G2JMH3 177 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 PRR33A8MZF0 331 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 OCIAD2Q56VL3 154 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 ARL17AQ8IVW1 177 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 EXOC3-AS1Q8N2X6 119 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 C9orf106Q8NAJ2 232 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 CACNG8Q8WXS5 425 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 IL4P05112 153 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 TMEM160Q9NX00 188 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 WNT2P09544 360 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 HIST1H1AQ02539 215 aaPredicted RBP10.51□□□□□ -0.73
SHOX2-205ENST00000490689 PET117Q6UWS5 81 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 Q8NFD4 153 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 OSR1Q8TAX0 266 aaPredicted RBP10.51□□□□□ -0.73
SHOX2-205ENST00000490689 ZC2HC1AQ96GY0 325 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 C2orf16Q68DN1 1984 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 XIRP2A4UGR9 3374 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 IGKV1D-17A0A075B6S4 117 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 H3BVH4 76 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 COL8A2P25067 703 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 VDAC2P45880 294 aaPredicted RBP10.51□□□□□ -0.73
SHOX2-205ENST00000490689 CENPVQ7Z7K6 275 aaPredicted RBP10.51□□□□□ -0.73
SHOX2-205ENST00000490689 LY96Q9Y6Y9 160 aa10.51□□□□□ -0.73
SHOX2-205ENST00000490689 SPG11Q96JI7 2443 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 C9orf172C9J069 976 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 GUSBP1Q15486 140 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 C2orf83Q53S99 150 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 MRPL27Q9P0M9 148 aaKnown RBP10.5□□□□□ -0.73
SHOX2-205ENST00000490689 SMAGPQ0VAQ4 97 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 FDCSPQ8NFU4 85 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 HIST1H4GQ99525 98 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 FBXL15Q9H469 300 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 IGLV2-14P01704 120 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 SMIM13P0DJ93 91 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 ZNF134P52741 427 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 PSG9Q00887 426 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 Q1RN00 199 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 MYOZ3Q8TDC0 251 aa10.5□□□□□ -0.73
SHOX2-205ENST00000490689 TCRBV4S1A1TA0A5B7 111 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 RPL7P18124 248 aaKnown RBP10.49□□□□□ -0.73
SHOX2-205ENST00000490689 VWC2Q2TAL6 325 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 PRDM6Q9NQX0 595 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 FOXA2Q9Y261 457 aaPredicted RBP10.49□□□□□ -0.73
SHOX2-205ENST00000490689 FAM27E3Q08E93 113 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 DEFB124Q8NES8 71 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 NHP2Q9NX24 153 aaKnown RBP10.49□□□□□ -0.73
SHOX2-205ENST00000490689 SRRM5B3KS81 715 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 ERVK11-1P61568 191 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 Q6ZSR3 168 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 JKAMPQ9P055 326 aa10.49□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV3-23P01764 117 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 MC5RP33032 325 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 EBLN2Q6P2I7 272 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 Q6ZR03 302 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 ZNF502Q8TBZ5 544 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 ATRXP46100 2492 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 TP73-AS1Q9UF72 201 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 PPIFP30405 207 aaKnown RBP10.48□□□□□ -0.73
SHOX2-205ENST00000490689 FAM90A1Q86YD7 464 aa10.48□□□□□ -0.73
SHOX2-205ENST00000490689 TRGV8A0A0C4DH27 118 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 GLRXP35754 106 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 SPANXN1Q5VSR9 72 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 DUX4L9Q6RFH8 374 aaPredicted RBP10.47□□□□□ -0.73
SHOX2-205ENST00000490689 RNF138Q8WVD3 245 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 PIEZO2Q9H5I5 2752 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV1-18A0A0C4DH31 117 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 SPAARA0A1B0GVQ0 90 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 FAM90A9PA6NNJ1 464 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 PMS2P5A8MQ11 134 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 NCR2O95944 276 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 TRIP6Q15654 476 aaKnown RBP10.47□□□□□ -0.73
SHOX2-205ENST00000490689 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.47□□□□□ -0.73
SHOX2-205ENST00000490689 FMC1Q96HJ9 113 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 MAP1LC3AQ9H492 121 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 F5H697 171 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 DKK1O94907 266 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 RNFT1Q5M7Z0 435 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 LINC00173Q6ZV60 143 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 ATP5IP56385 69 aaPredicted RBP10.47□□□□□ -0.73
SHOX2-205ENST00000490689 SAMD13Q5VXD3 122 aa10.47□□□□□ -0.73
SHOX2-205ENST00000490689 CHCHD1Q96BP2 118 aaKnown RBP10.47□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV3-49A0A0A0MS15 119 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 A0A0G2JLM5 398 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 FAM231BA6NCW3 169 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 NTN3O00634 580 aaPredicted RBP10.46□□□□□ -0.73
SHOX2-205ENST00000490689 ITGB1BP1O14713 200 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 RNASE2P10153 161 aaKnown RBP10.46□□□□□ -0.73
SHOX2-205ENST00000490689 FOXC2Q99958 501 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 GTSF1LQ9H1H1 148 aa10.46□□□□□ -0.73
SHOX2-205ENST00000490689 ZNF71Q9NQZ8 489 aaPredicted RBP10.46□□□□□ -0.73
SHOX2-205ENST00000490689 IGHV2-26A0A0B4J1V2 119 aa10.46□□□□□ -0.74
SHOX2-205ENST00000490689 LY6G6EA0A0G2JKS1 128 aa10.46□□□□□ -0.74
SHOX2-205ENST00000490689 ORMDL3Q8N138 153 aa10.46□□□□□ -0.74
SHOX2-205ENST00000490689 TEX45Q8NA69 505 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms