RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 EPDR1Q9UM22 224 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 APC2O95996 2303 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 POLEQ07864 2286 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 MYCNOSP40205 109 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 GDF5OSQ5U4N7 250 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 PERPQ96FX8 193 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 GRAMD2BQ96HH9 432 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 KCNS1Q96KK3 526 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 VAMP8Q9BV40 100 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 ZZEF1O43149 2961 aa14.37□□□□□ -0.11
VIM-206ENST00000487938 IGHV2-26A0A0B4J1V2 119 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 CRYGCP07315 174 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 FAM87AP0C7U9 286 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 UBE2G1P62253 170 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 FOXC1Q12948 553 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 ETFRF1Q6IPR1 90 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 TEX45Q8NA69 505 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 ZNF835Q9Y2P0 537 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 INSIG2Q9Y5U4 225 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 TACC2O95359 2948 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 TCAPO15273 167 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 NBEAP1P0C6P0 100 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 FAM231DQ6ZW35 169 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 SPACA3Q8IXA5 215 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 NGBQ9NPG2 151 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 ZNF586Q9NXT0 402 aa14.36□□□□□ -0.11
VIM-206ENST00000487938 DIRC3C9JPN6 131 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 RAB4AP20338 218 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 APOBEC3AP31941 199 aaPredicted RBP14.35□□□□□ -0.11
VIM-206ENST00000487938 GPR6P46095 362 aaPredicted RBP14.35□□□□□ -0.11
VIM-206ENST00000487938 TMEM183BQ1AE95 376 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 Q8N976 141 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 RALYQ9UKM9 306 aaKnown RBP14.35□□□□□ -0.11
VIM-206ENST00000487938 SIGLEC9Q9Y336 463 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 COX7A1P24310 79 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 TSKUQ8WUA8 353 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 TRGV9Q99603 122 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 C20orf144Q9BQM9 153 aa14.35□□□□□ -0.11
VIM-206ENST00000487938 SSBP4Q9BWG4 385 aaPredicted RBP14.35□□□□□ -0.11
VIM-206ENST00000487938 PTPRZ1P23471 2315 aaPredicted RBP14.35□□□□□ -0.11
VIM-206ENST00000487938 IGHV1-3A0A0C4DH29 117 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 HIGD1CA8MV81 97 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 HYPMO75409 117 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 CRYGBP07316 175 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 NTF3P20783 257 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 CAMPP49913 170 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 MIEN1Q9BRT3 115 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 ABCA1O95477 2261 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 MALRD1Q5VYJ5 2156 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 ZNF324O75467 553 aaPredicted RBP14.34□□□□□ -0.11
VIM-206ENST00000487938 IGLV1-47P01700 117 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 PRRX1P54821 245 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 LINC01560Q8TB33 94 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 C18orf32Q8TCD1 76 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 C22orf15Q8WYQ4 148 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 NEU1Q99519 415 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 FBXL15Q9H469 300 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 C7orf69Q9H7B7 122 aa14.34□□□□□ -0.11
VIM-206ENST00000487938 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.33□□□□□ -0.12
VIM-206ENST00000487938 VWC2LB2RUY7 222 aa14.33□□□□□ -0.12
VIM-206ENST00000487938 BUB1B-PAK6H3BSN5 160 aa14.33□□□□□ -0.12
VIM-206ENST00000487938 LINC00322Q6ZN03 302 aaPredicted RBP14.33□□□□□ -0.12
VIM-206ENST00000487938 TMEM116Q8NCL8 245 aa14.33□□□□□ -0.12
VIM-206ENST00000487938 STXBP6Q8NFX7 210 aa14.33□□□□□ -0.12
VIM-206ENST00000487938 PVRIGQ6DKI7 326 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 PPP1R27Q86WC6 154 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 NIT1Q86X76 327 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 CD3EP07766 207 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 HIST1H1EP10412 219 aaKnown RBP14.32□□□□□ -0.12
VIM-206ENST00000487938 CASP6P55212 293 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 TCF24Q7RTU0 167 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 WIPF2Q8TF74 440 aaPredicted RBP14.32□□□□□ -0.12
VIM-206ENST00000487938 SCNM1Q9BWG6 230 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 LRBAP50851 2863 aa14.32□□□□□ -0.12
VIM-206ENST00000487938 B9A039 149 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 SSX8Q7RTT4 187 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 CLEC7AQ9BXN2 247 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 TEX22C9J3V5 150 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 C3orf79P0CE67 100 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 GP9P14770 177 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 G0S2P27469 103 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 LYZP61626 148 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 C8orf46Q8TAG6 207 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 GPR82Q96P67 336 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 Q9H3A6 140 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 KLF12Q9Y4X4 402 aa14.31□□□□□ -0.12
VIM-206ENST00000487938 F11RQ9Y624 299 aaKnown RBP14.31□□□□□ -0.12
VIM-206ENST00000487938 PPIAL4CA0A0B4J2A2 164 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 PPIAL4GP0DN37 164 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 CHRDL1Q9BU40 450 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 K7ENP7 123 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 TOX4O94842 621 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 PSG1P11464 419 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 RASL11AQ6T310 242 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 IGFBPL1Q8WX77 278 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 TNFRSF14Q92956 283 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 WNT10AQ9GZT5 417 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 RELNP78509 3460 aa14.3□□□□□ -0.12
VIM-206ENST00000487938 PRB4P10163 310 aaPredicted RBP14.29□□□□□ -0.12
VIM-206ENST00000487938 PLGLAQ15195 96 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms