RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SRSF12Q8WXF0 261 aaKnown RBP9.06□□□□□ -0.96
HDAC6-228ENST00000486227 ST6GALNAC6Q969X2 333 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 PGLYRP4Q96LB8 373 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 FBXL7Q9UJT9 491 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 A0A1W2PNU3 283 aaPredicted RBP9.05□□□□□ -0.96
HDAC6-228ENST00000486227 UBE2V1Q13404 147 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM14EPQ6UXP3 125 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 GOLT1AQ6ZVE7 132 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 OR10W1Q8NGF6 305 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 GAFA1Q96PS6 74 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 SLC25A33Q9BSK2 321 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 TYMSP04818 313 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 SNRPD3P62318 126 aaKnown RBP9.05□□□□□ -0.96
HDAC6-228ENST00000486227 GCSAMLQ5JQS6 135 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 Q6ZRM9 215 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 RAB37Q96AX2 223 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3-49A0A0A0MS15 119 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 TIMM23O14925 209 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 WDR86Q86TI4 376 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 TRAV3A0A0B4J244 114 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 NBR2O15453 112 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 STAG3L2P0CL84 134 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 SCGB1C2P0DMR2 95 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 VDAC2P45880 294 aaPredicted RBP9.05□□□□□ -0.96
HDAC6-228ENST00000486227 FOXA3P55318 350 aaPredicted RBP9.05□□□□□ -0.96
HDAC6-228ENST00000486227 PRCDQ00LT1 54 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM116Q8NCL8 245 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 LIME1Q9H400 295 aa9.05□□□□□ -0.96
HDAC6-228ENST00000486227 IGLV3-1P01715 115 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 FAM215AQ9Y5M1 114 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 A0A1W2PRX2 142 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 NPSP0C0P6 89 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 MBNL3Q9NUK0 354 aaKnown RBP9.04□□□□□ -0.96
HDAC6-228ENST00000486227 AP5S1Q9NUS5 200 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 C21orf62Q9NYP8 219 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 SOX21Q9Y651 276 aaPredicted RBP9.04□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM189A5PLL7 270 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 E7EQL1 145 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 CD33P20138 364 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 SPANXN1Q5VSR9 72 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 LYPD2Q6UXB3 125 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 CEP350Q5VT06 3117 aa9.04□□□□□ -0.96
HDAC6-228ENST00000486227 YLPM1P49750 1951 aaKnown RBP9.04□□□□□ -0.96
HDAC6-228ENST00000486227 A0A1B0GV72 72 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV1-8P0DP01 117 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 TSPOP30536 169 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 C8orf46Q8TAG6 207 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 RNASE7Q9H1E1 156 aaKnown RBP9.03□□□□□ -0.96
HDAC6-228ENST00000486227 DNAH12Q6ZR08 3092 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 ZNF106Q9H2Y7 1883 aaKnown RBP9.03□□□□□ -0.96
HDAC6-228ENST00000486227 GCSHP23434 173 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 CEACAM8P31997 349 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-228ENST00000486227 TNFRSF14Q92956 283 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 ST20Q9HBF5 79 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 DOCK11Q5JSL3 2073 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV2-26A0A0B4J1V2 119 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 STAG3L3P0CL85 134 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 CD69Q07108 199 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 LOC389332A0A1B0GUA5 103 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 C9JCJ5 164 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 K7EM74 188 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 DLX6P56179 175 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 OR52E5Q8NH55 327 aa9.03□□□□□ -0.96
HDAC6-228ENST00000486227 MGPP08493 103 aa9.02□□□□□ -0.96
HDAC6-228ENST00000486227 MYOD1P15172 320 aa9.02□□□□□ -0.96
HDAC6-228ENST00000486227 COL8A2P25067 703 aa9.02□□□□□ -0.96
HDAC6-228ENST00000486227 GPR183P32249 361 aa9.02□□□□□ -0.96
HDAC6-228ENST00000486227 FAM53AQ6NSI3 398 aaPredicted RBP9.02□□□□□ -0.96
HDAC6-228ENST00000486227 ANKHD1Q8IWZ3 2542 aaKnown RBP9.02□□□□□ -0.97
HDAC6-228ENST00000486227 FAM90A9PA6NNJ1 464 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 WNT2P09544 360 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 ZNF585BQ52M93 769 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 COA6Q5JTJ3 125 aaKnown RBP9.02□□□□□ -0.97
HDAC6-228ENST00000486227 ERASQ7Z444 233 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 DERL1Q9BUN8 251 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 NCOA6Q14686 2063 aaPredicted RBP9.02□□□□□ -0.97
HDAC6-228ENST00000486227 GPX1P07203 203 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 ANOS1P23352 680 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 TCTAP57738 103 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 PSG9Q00887 426 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 TEX45Q8NA69 505 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 SPRY4Q9C004 299 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 IGHV3-66A0A0C4DH42 116 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 TMEM50AO95807 157 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 IGHV3-11P01762 117 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 TREML4Q6UXN2 200 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 LY96Q9Y6Y9 160 aa9.02□□□□□ -0.97
HDAC6-228ENST00000486227 NDUFS8O00217 210 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 PEX7O00628 323 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 LMO1P25800 156 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 IGF2-ASQ6U949 168 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 C3orf79P0CE67 100 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 TMEM136Q6ZRR5 245 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 ERVK11-1P61568 191 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 KLRD1Q13241 179 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 BPESC1Q9GZL8 116 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 ZNRD1Q9P1U0 126 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 PEMTQ9UBM1 199 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 PRR14LQ5THK1 2151 aa9.01□□□□□ -0.97
HDAC6-228ENST00000486227 ADAMTS9Q9P2N4 1935 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms