RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 HELTA6NFD8 242 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 FAM90A26D6RGX4 464 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 H3BP45 60 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 IFNA21P01568 189 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 SLC25A6P12236 298 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 ATP5IP56385 69 aaPredicted RBP13□□□□□ -0.33
COL6A1-204ENST00000486023 RPP30P78346 268 aaKnown RBP13□□□□□ -0.33
COL6A1-204ENST00000486023 C16orf54Q6UWD8 224 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 TP53TG1Q9Y2A0 90 aa13□□□□□ -0.33
COL6A1-204ENST00000486023 CSMD3Q7Z407 3707 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 TRAV2A0A0B4J234 112 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 CXorf65A6NEN9 183 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 KNCNA6PVL3 124 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 K7EQG2 157 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 CA1P00915 261 aaPredicted RBP12.99□□□□□ -0.33
COL6A1-204ENST00000486023 UBE2MP61081 183 aaKnown RBP12.99□□□□□ -0.33
COL6A1-204ENST00000486023 LYZP61626 148 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 PPP1R14BQ96C90 147 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 RNF125Q96EQ8 232 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 CIB3Q96Q77 187 aaPredicted RBP12.99□□□□□ -0.33
COL6A1-204ENST00000486023 U3KQE9 123 aa12.99□□□□□ -0.33
COL6A1-204ENST00000486023 STARD9Q9P2P6 4700 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 SACSQ9NZJ4 4579 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 SCGB1D2O95969 90 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 BTCP35070 178 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 AP2S1P53680 142 aaPredicted RBP12.98□□□□□ -0.33
COL6A1-204ENST00000486023 POLR2GP62487 172 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL6A1-204ENST00000486023 EWSR1Q01844 656 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL6A1-204ENST00000486023 PSMG4Q5JS54 123 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 GLMPQ8WWB7 406 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 RARRES2Q99969 163 aa12.98□□□□□ -0.33
COL6A1-204ENST00000486023 IGKV1D-37A0A075B6S9 117 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 SNRPGP15A8MWD9 76 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 FABP1P07148 127 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 ACTL10Q5JWF8 245 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 GSG1LQ6UXU4 331 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 SIGLEC15Q6ZMC9 328 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 DCANP1Q8TF63 244 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 C7orf50Q9BRJ6 194 aaKnown RBP12.97□□□□□ -0.33
COL6A1-204ENST00000486023 GSKIPQ9P0R6 139 aa12.97□□□□□ -0.33
COL6A1-204ENST00000486023 STRAPQ9Y3F4 350 aaKnown RBP12.97□□□□□ -0.33
COL6A1-204ENST00000486023 TRAV6A0A075B6T7 132 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 LCE6AA0A183 80 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 SMCO3A2RU48 225 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 PLA2G10O15496 165 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 BUB3O43684 328 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 SSSCA1O60232 199 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 NKX2-1P43699 371 aaPredicted RBP12.96□□□□□ -0.33
COL6A1-204ENST00000486023 OR11H2Q8NH07 326 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 PSENENQ9NZ42 101 aa12.96□□□□□ -0.33
COL6A1-204ENST00000486023 AKR1C1Q04828 323 aa12.95□□□□□ -0.34
COL6A1-204ENST00000486023 OR8G2PQ6IF36 304 aa12.95□□□□□ -0.34
COL6A1-204ENST00000486023 PFDN2Q9UHV9 154 aa12.95□□□□□ -0.34
COL6A1-204ENST00000486023 DEFB4AO15263 64 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 LYRM1O43325 122 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 GATA2P23769 480 aaPredicted RBP12.94□□□□□ -0.34
COL6A1-204ENST00000486023 ID3Q02535 119 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 IAH1Q2TAA2 248 aaPredicted RBP12.94□□□□□ -0.34
COL6A1-204ENST00000486023 RAB40CQ96S21 281 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 C20orf85Q9H1P6 137 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 NRN1Q9NPD7 142 aa12.94□□□□□ -0.34
COL6A1-204ENST00000486023 IGKV1OR2-108A0A075B7D4 117 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 FAM25EA8MYX2 175 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
COL6A1-204ENST00000486023 ACOT7LQ6ZUV0 252 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 TMEM217Q8N7C4 229 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 GATAD1Q8WUU5 269 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 LINC00052Q96N35 136 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 TRGV9Q99603 122 aa12.93□□□□□ -0.34
COL6A1-204ENST00000486023 CCSO14618 274 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 JTBO76095 146 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 ORM2P19652 201 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 RRAS2P62070 204 aaPredicted RBP12.92□□□□□ -0.34
COL6A1-204ENST00000486023 TRPT1Q86TN4 253 aaKnown RBP12.92□□□□□ -0.34
COL6A1-204ENST00000486023 OR4D5Q8NGN0 318 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 SLC25A22Q9H936 323 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 CLEC5AQ9NY25 188 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 RYR2Q92736 4967 aa12.92□□□□□ -0.34
COL6A1-204ENST00000486023 TCRBP04435 133 aa12.91□□□□□ -0.34
COL6A1-204ENST00000486023 NUP62P37198 522 aaPredicted RBP12.91□□□□□ -0.34
COL6A1-204ENST00000486023 CNPY1Q3B7I2 92 aa12.91□□□□□ -0.34
COL6A1-204ENST00000486023 TMEM182Q6ZP80 229 aaPredicted RBP12.91□□□□□ -0.34
COL6A1-204ENST00000486023 OR8I2Q8N0Y5 310 aa12.91□□□□□ -0.34
COL6A1-204ENST00000486023 THAP8Q8NA92 274 aa12.91□□□□□ -0.34
COL6A1-204ENST00000486023 PRSS46E5RG02 174 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 CCNKO75909 580 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 IGKV3-20P01619 116 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 METTL15P1P0C7V9 234 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 DEFB1P60022 68 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 ZBTB8BQ8NAP8 495 aaPredicted RBP12.9□□□□□ -0.34
COL6A1-204ENST00000486023 BPIFCQ8NFQ6 507 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 OR1B1Q8NGR6 318 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 MITD1Q8WV92 249 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 SEC22CQ9BRL7 303 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 WDR12Q9GZL7 423 aaKnown RBP12.9□□□□□ -0.34
COL6A1-204ENST00000486023 DOK5Q9P104 306 aa12.9□□□□□ -0.34
COL6A1-204ENST00000486023 C4BPBP20851 252 aa12.89□□□□□ -0.35
COL6A1-204ENST00000486023 ZNF846Q147U1 533 aa12.89□□□□□ -0.35
COL6A1-204ENST00000486023 MORN3Q6PF18 240 aaPredicted RBP12.89□□□□□ -0.35
COL6A1-204ENST00000486023 SMIM8Q96KF7 97 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms