RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TXN2Q99757 166 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 SLC25A32Q9H2D1 315 aa13.09□□□□□ -0.31
VIM-205ENST00000485947 WI2-2373I1.2A0A1W2PRP0 233 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 LINC01619G3V211 115 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 SCGB2A1O75556 95 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 NDUFB8O95169 186 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 FCGR2BP31994 310 aaPredicted RBP13.08□□□□□ -0.32
VIM-205ENST00000485947 NPBWR1P48145 328 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 CAMLGP49069 296 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 RHOGP84095 191 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 LRRC20Q8TCA0 184 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 MGST2Q99735 147 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 RSG1Q9BU20 258 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 GGTLC1Q9BX51 225 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 SH3BGRL3Q9H299 93 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 C21orf62Q9NYP8 219 aa13.08□□□□□ -0.32
VIM-205ENST00000485947 TRAV30A0A087WSZ9 112 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 UMAD1C9J7I0 102 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 AGPAT2O15120 278 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 CLN5O75503 358 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 TRGV3P03979 118 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 HSPB1P04792 205 aaKnown RBP13.07□□□□□ -0.32
VIM-205ENST00000485947 RAB5CP51148 216 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 DEFB121Q5J5C9 76 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 USMG5Q96IX5 58 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 TRGV9Q99603 122 aa13.07□□□□□ -0.32
VIM-205ENST00000485947 GAR1Q9NY12 217 aaKnown RBP13.07□□□□□ -0.32
VIM-205ENST00000485947 MRPL36Q9P0J6 103 aaKnown RBP13.07□□□□□ -0.32
VIM-205ENST00000485947 IGKV1OR2-108A0A075B7D4 117 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 TRBV7-1A0A0A6YYK4 115 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 IGHV3-21A0A0B4J1V1 117 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 ZFP92A6NM28 416 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 OVOL1O14753 267 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 RPL29P47914 159 aaKnown RBP13.06□□□□□ -0.32
VIM-205ENST00000485947 SULT1A2P50226 295 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 TPPP2P59282 170 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 SELENOTP62341 195 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 C15orf32Q32M92 178 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 RNF141Q8WVD5 230 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 EEF1AKMT3Q96AZ1 226 aa13.06□□□□□ -0.32
VIM-205ENST00000485947 MFSD2BA6NFX1 497 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 IGHV3-48P01763 117 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 MBP02144 154 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 FABP1P07148 127 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 OR10J1P30954 320 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 ATP5G2Q06055 141 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 FAM209BQ5JX69 171 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 AKR1C8PQ5T2L2 129 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 TMEM182Q6ZP80 229 aaPredicted RBP13.05□□□□□ -0.32
VIM-205ENST00000485947 CYP2G1PQ6ZSU1 146 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 ZNF502Q8TBZ5 544 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 MS4A10Q96PG2 267 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 B9D2Q9BPU9 175 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 SLC45A2Q9UMX9 530 aa13.05□□□□□ -0.32
VIM-205ENST00000485947 IGKV1D-37A0A075B6S9 117 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 GNG7O60262 68 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 IGLC1P0CG04 106 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 ZP3P21754 424 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 PRR20EP86478 221 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 PRR20CP86479 221 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 PRR20DP86480 221 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 PRR20BP86481 221 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 PRR20AP86496 221 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 Q56UQ5 140 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 DPPA3Q6W0C5 159 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 OR5B12Q96R08 314 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 ZNF256Q9Y2P7 627 aaPredicted RBP13.04□□□□□ -0.32
VIM-205ENST00000485947 PXMP4Q9Y6I8 212 aa13.04□□□□□ -0.32
VIM-205ENST00000485947 RAB14P61106 215 aa13.03□□□□□ -0.32
VIM-205ENST00000485947 B2MP61769 119 aa13.03□□□□□ -0.32
VIM-205ENST00000485947 ACOT6Q3I5F7 207 aaPredicted RBP13.03□□□□□ -0.32
VIM-205ENST00000485947 FFAR4Q5NUL3 377 aa13.03□□□□□ -0.32
VIM-205ENST00000485947 FAM74A1Q5RGS3 127 aa13.03□□□□□ -0.32
VIM-205ENST00000485947 DNAH3Q8TD57 4116 aa13.03□□□□□ -0.32
VIM-205ENST00000485947 F8W735 103 aaPredicted RBP13.02□□□□□ -0.33
VIM-205ENST00000485947 NHLRC4P0CG21 123 aaPredicted RBP13.02□□□□□ -0.33
VIM-205ENST00000485947 YPEL3P61236 119 aaPredicted RBP13.02□□□□□ -0.33
VIM-205ENST00000485947 DEFA5Q01523 94 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 TMEM41BQ5BJD5 291 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 MIC13Q5XKP0 118 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 STPG3Q8N7X2 389 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 BPIFCQ8NFQ6 507 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 DLX4Q92988 240 aaPredicted RBP13.02□□□□□ -0.33
VIM-205ENST00000485947 SAT2Q96F10 170 aaPredicted RBP13.02□□□□□ -0.33
VIM-205ENST00000485947 SLC39A9Q9NUM3 307 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 PLA2G2EQ9NZK7 142 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 RFNGQ9Y644 331 aa13.02□□□□□ -0.33
VIM-205ENST00000485947 IGHV4OR15-8A0A075B7B6 117 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 A0A087WW49 117 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 M6PRP20645 277 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 ELLP55199 621 aaPredicted RBP13.01□□□□□ -0.33
VIM-205ENST00000485947 BLOC1S1P78537 153 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 CLLU1Q5K131 121 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 PXDC1Q5TGL8 231 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 SPSB3Q6PJ21 355 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 Q6ZRG5 221 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 CCDC140Q96MF4 163 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 ELOVL1Q9BW60 279 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 S4R3C0 116 aa13.01□□□□□ -0.33
VIM-205ENST00000485947 NUPL2O15504 423 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms