RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 OR1L4Q8NGR5 311 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 OR2K2Q8NGT1 345 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 PRSS3P2Q8NHM4 247 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 FLYWCH2Q96CP2 140 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 C10orf55Q5SWW7 151 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 MOGAT3Q86VF5 341 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 E7EUB6 86 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 NBEAP1P0C6P0 100 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 C17orf58Q2M2W7 97 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 SPRNQ5BIV9 151 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 THYN1Q9P016 225 aa15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 A0A0G2JLM5 398 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 LOC389332A0A1B0GUA5 103 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 A6NDN8 102 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 ACP1P24666 158 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 FXYD7P58549 80 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 KIR3DS1Q14943 382 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 LINC01545Q5VT33 79 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 GCSAMQ8N6F7 178 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 ASCL2Q99929 193 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 ZNF318Q5VUA4 2279 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 C9orf118A6NHY6 69 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 DLL1O00548 723 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 FA2HQ7L5A8 372 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 ZNF576Q9H609 170 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 SPRR3Q9UBC9 169 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 PLXNB1O43157 2135 aa15.16■□□□□ 0.02
CCDC88B-207ENST00000479965 FBLL1A6NHQ2 334 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 VWA1Q6PCB0 445 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 S100A7AQ86SG5 101 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 CIARTQ8N365 385 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 OR1L8Q8NGR8 309 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 TRGV5A0A0B4J1U4 118 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 IGHV3-21A0A0B4J1V1 117 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 CECR9P0C854 216 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 PLP1P60201 277 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 UFSP1Q6NVU6 142 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 INO80CQ6PI98 192 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 TMEM105Q8N8V8 129 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 NEU4Q8WWR8 484 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 HARBI1Q96MB7 349 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 ZNF714Q96N38 554 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 SRRM5B3KS81 715 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 TMEM186Q96B77 213 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 ADTRPQ96IZ2 230 aa15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 MRPL36Q9P0J6 103 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-207ENST00000479965 APELAP0DMC3 54 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 CT45A6P0DMU7 189 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 CT45A5P0DMU8 189 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 CT45A7P0DMV0 189 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 PRSS57Q6UWY2 283 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 NDFIP1Q9BT67 221 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 CHTOPQ9Y3Y2 248 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 SPCS1Q9Y6A9 102 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 PCSK5Q92824 1860 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 LOC400499M0QZD8 3231 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 Q71RC1 249 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 OR4A5Q8NH83 315 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 ITLN1Q8WWA0 313 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 ZNF747Q9BV97 191 aa15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 F11RQ9Y624 299 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-207ENST00000479965 KBTBD11-OT1A0A1B0GTJ5 212 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 hADV38S2A0JD32 116 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 K7EP34 96 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 SPRY3O43610 288 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 CSN1S1P47710 185 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 PRNTQ86SH4 94 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 CACNG8Q8WXS5 425 aa15.13■□□□□ 0.01
CCDC88B-207ENST00000479965 KLRC4-KLRK1H3BQV0 150 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 FAM106CPP0CH98 169 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 FAM106AQ4KMX7 169 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 RNFT1Q5M7Z0 435 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 PERPQ96FX8 193 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 JKAMPQ9P055 326 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 PILRBQ9UKJ0 227 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 TCRBV4S1A1TA0A5B7 111 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 H3BRM9 83 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 NMUP48645 174 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 MLST8Q9BVC4 326 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 PRSS22Q9GZN4 317 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 SSUH2Q9Y2M2 353 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 SAMD13Q5VXD3 122 aa15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 SOX21Q9Y651 276 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-207ENST00000479965 MEF2CQ06413 473 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-207ENST00000479965 PEAR1Q5VY43 1037 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-207ENST00000479965 ARMS2P0C7Q2 107 aa15.11■□□□□ 0.01
CCDC88B-207ENST00000479965 FAM87AP0C7U9 286 aa15.11■□□□□ 0.01
CCDC88B-207ENST00000479965 GTSF1LQ9H1H1 148 aa15.11■□□□□ 0.01
CCDC88B-207ENST00000479965 POU2AF1Q16633 256 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 SRSF12Q8WXF0 261 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 SERTM2A0A1B0GWG4 89 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 A1L4Q6 167 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 C19orf71A6NCJ1 209 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 WT1-ASQ06250 92 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 GUCD1Q96NT3 240 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 Q9H3A6 140 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 RP1L1Q8IWN7 2480 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 TCRAP04437 139 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 CACNG7P62955 275 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms