RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 YPEL3P61236 119 aaPredicted RBP12.1□□□□□ -0.47
VIM-204ENST00000478746 OR1S2Q8NGQ3 325 aa12.1□□□□□ -0.47
VIM-204ENST00000478746 GPX8Q8TED1 209 aa12.1□□□□□ -0.47
VIM-204ENST00000478746 C7orf50Q9BRJ6 194 aaKnown RBP12.1□□□□□ -0.47
VIM-204ENST00000478746 RPS10-NUDT3A0A1W2PQS6 291 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 BUB3O43684 328 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 IGLC1P0CG04 106 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 OR10J1P30954 320 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 TNFSF8P32971 234 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 AKR1C2P52895 323 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 USF2Q15853 346 aaPredicted RBP12.09□□□□□ -0.47
VIM-204ENST00000478746 SNX29P2Q8IUI4 249 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 OR4B1Q8NGF8 309 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 C15orf40Q8WUR7 153 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 LINC00052Q96N35 136 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 CLUHP3Q96NS8 147 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 SAV1Q9H4B6 383 aaPredicted RBP12.09□□□□□ -0.47
VIM-204ENST00000478746 PTTG2Q9NZH5 202 aa12.09□□□□□ -0.47
VIM-204ENST00000478746 DMBT1Q9UGM3 2413 aaPredicted RBP12.09□□□□□ -0.47
VIM-204ENST00000478746 GSTZ1O43708 216 aaPredicted RBP12.08□□□□□ -0.48
VIM-204ENST00000478746 ATG12O94817 140 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 IL4P05112 153 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 IL18Q14116 193 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 RRN3P1Q2M238 152 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 C1orf158Q8N1D5 194 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 ZNF709Q8N972 641 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 SLC35B3Q9H1N7 401 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 RABL2AQ9UBK7 228 aaPredicted RBP12.08□□□□□ -0.48
VIM-204ENST00000478746 RABL2BQ9UNT1 228 aa12.08□□□□□ -0.48
VIM-204ENST00000478746 FABP12A6NFH5 140 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 EPM2AB3EWF7 344 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 P0C879 139 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 PGAM2P15259 253 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 RND2P52198 227 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 RND3P61587 244 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 BSXQ3C1V8 233 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 PRSS54Q6PEW0 395 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 FOXI2Q6ZQN5 318 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 SCPEP1Q9HB40 452 aa12.07□□□□□ -0.48
VIM-204ENST00000478746 NUDT3O95989 172 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 SLC25A4P12235 298 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 RCVRNP35243 200 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 ID1P41134 155 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 CCL18P55774 89 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 PSG9Q00887 426 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 SPANXN2Q5MJ10 180 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 ZNF486Q96H40 463 aaPredicted RBP12.06□□□□□ -0.48
VIM-204ENST00000478746 TP53RKQ96S44 253 aa12.06□□□□□ -0.48
VIM-204ENST00000478746 RD3LP0DJH9 198 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 PI3P19957 117 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 HTR2BP41595 481 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 PIGPP57054 158 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 MRPS10P82664 201 aaKnown RBP12.05□□□□□ -0.48
VIM-204ENST00000478746 SPATA31B1PQ5VZV4 182 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 CCDC190Q86UF4 302 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 MAGT1Q9H0U3 335 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 KLK11Q9UBX7 282 aa12.05□□□□□ -0.48
VIM-204ENST00000478746 C3orf85A0A1B0GTC6 90 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 M0QYG6 137 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 INAFM2P0DMQ5 153 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 ZNF79Q15937 498 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 TRIM16LQ309B1 348 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 RNASE12Q5GAN4 147 aaKnown RBP12.04□□□□□ -0.48
VIM-204ENST00000478746 COQ8AQ8NI60 647 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 RRNAD1Q96FB5 475 aaKnown RBP12.04□□□□□ -0.48
VIM-204ENST00000478746 ABHD1Q96SE0 405 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 TMEM208Q9BTX3 173 aa12.04□□□□□ -0.48
VIM-204ENST00000478746 WDR12Q9GZL7 423 aaKnown RBP12.04□□□□□ -0.48
VIM-204ENST00000478746 F5H768 121 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 TOMM40O96008 361 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 PSMB3P49720 205 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 KRTAP10-2P60368 255 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 SPCS3P61009 180 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 FAM78BQ5VT40 261 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 EBLN2Q6P2I7 272 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 LINC00299Q6ZSB3 139 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 OR51G1Q8NGK1 321 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 RNASE11Q8TAA1 199 aaKnown RBP12.03□□□□□ -0.48
VIM-204ENST00000478746 RNASEH2CQ8TDP1 164 aaKnown RBP12.03□□□□□ -0.48
VIM-204ENST00000478746 NPIPB3Q92617 1050 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 HEYLQ9NQ87 328 aaPredicted RBP12.03□□□□□ -0.48
VIM-204ENST00000478746 PFDN2Q9UHV9 154 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 LINC00588Q9Y4M8 146 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 V9GYH0 126 aa12.03□□□□□ -0.48
VIM-204ENST00000478746 LYRM9A8MSI8 78 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 GABARAPH6UMI1 98 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 CTDSPLO15194 276 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 DEFB130BP0DP73 79 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 DEFB130AP0DP74 79 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 C2orf83Q53S99 150 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 PYDC2Q56P42 97 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 ETFRF1Q6IPR1 90 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 OR52I2Q8NH67 350 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 SOSTQ9BQB4 213 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 COPZ2Q9P299 210 aa12.02□□□□□ -0.49
VIM-204ENST00000478746 A0A0G2JRQ6 117 aa12.01□□□□□ -0.49
VIM-204ENST00000478746 F6UB75 175 aa12.01□□□□□ -0.49
VIM-204ENST00000478746 NXPH3O95157 252 aa12.01□□□□□ -0.49
VIM-204ENST00000478746 PSG1P11464 419 aa12.01□□□□□ -0.49
VIM-204ENST00000478746 NUP62P37198 522 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms